miRNA display CGI


Results 21 - 40 of 685 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6514 3' -71 NC_001847.1 + 61383 0.8 0.028774
Target:  5'- aGCGGCCCGCGCCgCCgCCCggcgcuuggaacuGCCCUCg -3'
miRNA:   3'- gCGCCGGGCGCGGaGGgGGG-------------CGGGGG- -5'
6514 3' -71 NC_001847.1 + 39361 0.8 0.028846
Target:  5'- uGC-GCCCGCGCCgCCCCCCGCgCCa -3'
miRNA:   3'- gCGcCGGGCGCGGaGGGGGGCGgGGg -5'
6514 3' -71 NC_001847.1 + 135062 0.8 0.029571
Target:  5'- uCGCGcUCCGCGCCcaUCCcccaCCCCGCCCCCg -3'
miRNA:   3'- -GCGCcGGGCGCGG--AGG----GGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 500 0.79 0.030315
Target:  5'- gGCGGCCgCGCGCCaacCCCCCUGUCCgCg -3'
miRNA:   3'- gCGCCGG-GCGCGGa--GGGGGGCGGGgG- -5'
6514 3' -71 NC_001847.1 + 103313 0.79 0.030315
Target:  5'- gGCGGCCgCGCGCCaacCCCCCUGUCCgCg -3'
miRNA:   3'- gCGCCGG-GCGCGGa--GGGGGGCGGGgG- -5'
6514 3' -71 NC_001847.1 + 103033 0.79 0.031
Target:  5'- gGCGGCgggcgggccgcagCCGCGUUUCCCCCCuCCCCCc -3'
miRNA:   3'- gCGCCG-------------GGCGCGGAGGGGGGcGGGGG- -5'
6514 3' -71 NC_001847.1 + 39781 0.79 0.031077
Target:  5'- gCGCGGUCCGcCGCCagCCCCCGCCagucgaCCg -3'
miRNA:   3'- -GCGCCGGGC-GCGGagGGGGGCGGg-----GG- -5'
6514 3' -71 NC_001847.1 + 6224 0.79 0.031077
Target:  5'- cCGCuuccuGCCCaGCGCCacugcUCCCUCCGCCCCCa -3'
miRNA:   3'- -GCGc----CGGG-CGCGG-----AGGGGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 109037 0.79 0.031077
Target:  5'- cCGCuuccuGCCCaGCGCCacugcUCCCUCCGCCCCCa -3'
miRNA:   3'- -GCGc----CGGG-CGCGG-----AGGGGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 103697 0.79 0.031858
Target:  5'- gGCGGCCCGCGCCggggCCgCCgcggccgccggCCGCCgCCCg -3'
miRNA:   3'- gCGCCGGGCGCGGa---GG-GG-----------GGCGG-GGG- -5'
6514 3' -71 NC_001847.1 + 884 0.79 0.031858
Target:  5'- gGCGGCCCGCGCCggggCCgCCgcggccgccggCCGCCgCCCg -3'
miRNA:   3'- gCGCCGGGCGCGGa---GG-GG-----------GGCGG-GGG- -5'
6514 3' -71 NC_001847.1 + 10424 0.79 0.032658
Target:  5'- gCGCGGUUCGCGCUgccgCCCCCGCgCCCg -3'
miRNA:   3'- -GCGCCGGGCGCGGag--GGGGGCGgGGG- -5'
6514 3' -71 NC_001847.1 + 917 0.79 0.033478
Target:  5'- gGCGGaCCCG-GCCUUCCCaCCGCCgCCCu -3'
miRNA:   3'- gCGCC-GGGCgCGGAGGGG-GGCGG-GGG- -5'
6514 3' -71 NC_001847.1 + 102476 0.79 0.034318
Target:  5'- aGCgGGCCCGCGCCgccggcgccgUCCaCCUCGCCCuCCa -3'
miRNA:   3'- gCG-CCGGGCGCGG----------AGG-GGGGCGGG-GG- -5'
6514 3' -71 NC_001847.1 + 47220 0.78 0.036061
Target:  5'- gCGCGG-CCGCGCCcagCCccacgCCCCGCCCCUg -3'
miRNA:   3'- -GCGCCgGGCGCGGa--GG-----GGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 100715 0.78 0.03789
Target:  5'- cCGCGGCCCGaaguacuUCUUCCgCCGCCCCCa -3'
miRNA:   3'- -GCGCCGGGCgc-----GGAGGGgGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 131159 0.78 0.039811
Target:  5'- gCGgGGCCgCGCGCCcgggCCCCCggCGCCCUCg -3'
miRNA:   3'- -GCgCCGG-GCGCGGa---GGGGG--GCGGGGG- -5'
6514 3' -71 NC_001847.1 + 28346 0.78 0.039811
Target:  5'- gCGgGGCCgCGCGCCcgggCCCCCggCGCCCUCg -3'
miRNA:   3'- -GCgCCGG-GCGCGGa---GGGGG--GCGGGGG- -5'
6514 3' -71 NC_001847.1 + 61951 0.78 0.041723
Target:  5'- gCGCGGCCCGCGCgggccgaCUCCgCCgCCGCgUCCg -3'
miRNA:   3'- -GCGCCGGGCGCG-------GAGG-GG-GGCGgGGG- -5'
6514 3' -71 NC_001847.1 + 80580 0.77 0.042871
Target:  5'- cCGCGGggccgucguccUCCGCGCCgCCCCCgccgucugCGCCCCCg -3'
miRNA:   3'- -GCGCC-----------GGGCGCGGaGGGGG--------GCGGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.