miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6514 5' -50 NC_001847.1 + 69681 0.66 0.9954
Target:  5'- gGCAGcGuuGGGcgcGGGGCCgGCGCUCGGu -3'
miRNA:   3'- -UGUUaCuuCUU---UCUCGG-CGUGAGCCu -5'
6514 5' -50 NC_001847.1 + 32785 0.71 0.924171
Target:  5'- --uGUGggGGGAGGGCCGgGggCGGAc -3'
miRNA:   3'- uguUACuuCUUUCUCGGCgUgaGCCU- -5'
6514 5' -50 NC_001847.1 + 66504 0.72 0.892089
Target:  5'- gGCGGUGAAGuuugggcuGGAGCUGCGCggcUGGGg -3'
miRNA:   3'- -UGUUACUUCuu------UCUCGGCGUGa--GCCU- -5'
6514 5' -50 NC_001847.1 + 659 1.09 0.008529
Target:  5'- gACAAUGAAGAAAGAGCCGCACUCGGAc -3'
miRNA:   3'- -UGUUACUUCUUUCUCGGCGUGAGCCU- -5'
6514 5' -50 NC_001847.1 + 75466 0.66 0.992753
Target:  5'- gACcggGggGGAGGGGCCagagcGCACgggCGGGc -3'
miRNA:   3'- -UGuuaCuuCUUUCUCGG-----CGUGa--GCCU- -5'
6514 5' -50 NC_001847.1 + 73117 0.66 0.992753
Target:  5'- -gGGUGgcGGAGGuAGCCGCcguGCUCGcGGa -3'
miRNA:   3'- ugUUACuuCUUUC-UCGGCG---UGAGC-CU- -5'
6514 5' -50 NC_001847.1 + 92101 0.67 0.98578
Target:  5'- -gGAUGAGGAAGGAGUaguuggaguagCGCACcuuuUCGGc -3'
miRNA:   3'- ugUUACUUCUUUCUCG-----------GCGUG----AGCCu -5'
6514 5' -50 NC_001847.1 + 65096 0.67 0.983914
Target:  5'- gGCGAUcGAGAA--GGCCGCGCUCa-- -3'
miRNA:   3'- -UGUUAcUUCUUucUCGGCGUGAGccu -5'
6514 5' -50 NC_001847.1 + 83393 0.68 0.979633
Target:  5'- uCGAUGuccuccuuGGAGAGcAGCCGCGC-CGGc -3'
miRNA:   3'- uGUUACu-------UCUUUC-UCGGCGUGaGCCu -5'
6514 5' -50 NC_001847.1 + 24105 0.7 0.949613
Target:  5'- gGCGcgGGucccAGGGCuCGCACUCGGGc -3'
miRNA:   3'- -UGUuaCUucuuUCUCG-GCGUGAGCCU- -5'
6514 5' -50 NC_001847.1 + 67002 0.69 0.953913
Target:  5'- gGCGccGGAGAAGGGGCagacgCGCGCUCGc- -3'
miRNA:   3'- -UGUuaCUUCUUUCUCG-----GCGUGAGCcu -5'
6514 5' -50 NC_001847.1 + 76695 0.67 0.983914
Target:  5'- uGCuuuGUGGcgcGGGAGGAGgCGCGC-CGGGa -3'
miRNA:   3'- -UGu--UACU---UCUUUCUCgGCGUGaGCCU- -5'
6514 5' -50 NC_001847.1 + 42960 0.66 0.9954
Target:  5'- cGCGcgGggGggGcGGGCCGCcggccgGCcCGGGu -3'
miRNA:   3'- -UGUuaCuuCuuU-CUCGGCG------UGaGCCU- -5'
6514 5' -50 NC_001847.1 + 31707 0.69 0.953913
Target:  5'- gGCGG-GggGAGGcgcGGGCCGCGCgccgcugCGGAg -3'
miRNA:   3'- -UGUUaCuuCUUU---CUCGGCGUGa------GCCU- -5'
6514 5' -50 NC_001847.1 + 27974 0.66 0.994624
Target:  5'- cGCGGUGGAGGc--GGCCGCgGC-CGGGg -3'
miRNA:   3'- -UGUUACUUCUuucUCGGCG-UGaGCCU- -5'
6514 5' -50 NC_001847.1 + 21927 0.67 0.983914
Target:  5'- gGCGAggcgGAGGAGAGGaCCGCgGCUCGcGGc -3'
miRNA:   3'- -UGUUa---CUUCUUUCUcGGCG-UGAGC-CU- -5'
6514 5' -50 NC_001847.1 + 96197 0.69 0.953495
Target:  5'- gGCAAUGGcggggccGGAGucGGGGCCGgAgUCGGGg -3'
miRNA:   3'- -UGUUACU-------UCUU--UCUCGGCgUgAGCCU- -5'
6514 5' -50 NC_001847.1 + 96086 0.71 0.920671
Target:  5'- gGCAAUGgcGGAgccggagucggggccGGAGCCGgAgUCGGGg -3'
miRNA:   3'- -UGUUACuuCUU---------------UCUCGGCgUgAGCCU- -5'
6514 5' -50 NC_001847.1 + 6839 0.66 0.992753
Target:  5'- aGCGGggaguugGggGggGGGGCgGCGCUUGc- -3'
miRNA:   3'- -UGUUa------CuuCuuUCUCGgCGUGAGCcu -5'
6514 5' -50 NC_001847.1 + 85514 0.67 0.990396
Target:  5'- cGCGAgGAAGAccAGGGCCGU-UUCGGGa -3'
miRNA:   3'- -UGUUaCUUCUu-UCUCGGCGuGAGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.