miRNA display CGI


Results 1 - 20 of 65 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6518 3' -60.9 NC_001847.1 + 2752 1.06 0.001454
Target:  5'- gGAGCGAGCGAGGGCGCCUCGUCGUCUu -3'
miRNA:   3'- -CUCGCUCGCUCCCGCGGAGCAGCAGA- -5'
6518 3' -60.9 NC_001847.1 + 79594 0.78 0.13992
Target:  5'- --uCGGGCGGGGGCGCCgggggCGUUGUCg -3'
miRNA:   3'- cucGCUCGCUCCCGCGGa----GCAGCAGa -5'
6518 3' -60.9 NC_001847.1 + 77418 0.76 0.179405
Target:  5'- cGAGaCGGGCGAGGGC--UUCGUCGUCg -3'
miRNA:   3'- -CUC-GCUCGCUCCCGcgGAGCAGCAGa -5'
6518 3' -60.9 NC_001847.1 + 5024 0.76 0.188405
Target:  5'- -cGCGcGCGAGGGCGCuCUCGuacUCGUCc -3'
miRNA:   3'- cuCGCuCGCUCCCGCG-GAGC---AGCAGa -5'
6518 3' -60.9 NC_001847.1 + 57773 0.74 0.245253
Target:  5'- aGAGCGGGCGccGGCGCCaCG-CGUCg -3'
miRNA:   3'- -CUCGCUCGCucCCGCGGaGCaGCAGa -5'
6518 3' -60.9 NC_001847.1 + 84539 0.74 0.251073
Target:  5'- uGGCGGGCGGGGcggggcguGCGCCUCGuacacggccuccUCGUCg -3'
miRNA:   3'- cUCGCUCGCUCC--------CGCGGAGC------------AGCAGa -5'
6518 3' -60.9 NC_001847.1 + 48641 0.72 0.314924
Target:  5'- cGGCG-GCGGGGcGCcgccgcccccgcaGCCUCGUCGUCc -3'
miRNA:   3'- cUCGCuCGCUCC-CG-------------CGGAGCAGCAGa -5'
6518 3' -60.9 NC_001847.1 + 109836 0.71 0.360021
Target:  5'- uGGGCGcgcccucgucGGCGAGGGCGCCaCGUgGUg- -3'
miRNA:   3'- -CUCGC----------UCGCUCCCGCGGaGCAgCAga -5'
6518 3' -60.9 NC_001847.1 + 70248 0.71 0.360021
Target:  5'- gGGGCGGGCGGcGGGCGCgCggCGUUGcUCUc -3'
miRNA:   3'- -CUCGCUCGCU-CCCGCG-Ga-GCAGC-AGA- -5'
6518 3' -60.9 NC_001847.1 + 129024 0.71 0.391949
Target:  5'- uGGCG-GCGAGGcgcucgcgccGCGCCUCGcgggCGUCUc -3'
miRNA:   3'- cUCGCuCGCUCC----------CGCGGAGCa---GCAGA- -5'
6518 3' -60.9 NC_001847.1 + 20263 0.71 0.400215
Target:  5'- aGAGCGAgacgGCGAGgucGGCGCCgcgCGUCGg-- -3'
miRNA:   3'- -CUCGCU----CGCUC---CCGCGGa--GCAGCaga -5'
6518 3' -60.9 NC_001847.1 + 70701 0.7 0.40859
Target:  5'- cGGGCGgcGGCGGGGGCGCC-CG-CGg-- -3'
miRNA:   3'- -CUCGC--UCGCUCCCGCGGaGCaGCaga -5'
6518 3' -60.9 NC_001847.1 + 17592 0.7 0.425665
Target:  5'- cGGGCGGggcccGCGgaaaGGGGUugcgcacgGCCUCGUCGUCg -3'
miRNA:   3'- -CUCGCU-----CGC----UCCCG--------CGGAGCAGCAGa -5'
6518 3' -60.9 NC_001847.1 + 20746 0.7 0.443158
Target:  5'- cGGCG-GUGAGGcGgGCCUCGccuUCGUCg -3'
miRNA:   3'- cUCGCuCGCUCC-CgCGGAGC---AGCAGa -5'
6518 3' -60.9 NC_001847.1 + 13871 0.7 0.452055
Target:  5'- uGGCGAGgGGGGGCGCCUUugGcCGg-- -3'
miRNA:   3'- cUCGCUCgCUCCCGCGGAG--CaGCaga -5'
6518 3' -60.9 NC_001847.1 + 111181 0.7 0.452055
Target:  5'- aGGGC-AGCGAGGGCuUCUCGccCGUCUu -3'
miRNA:   3'- -CUCGcUCGCUCCCGcGGAGCa-GCAGA- -5'
6518 3' -60.9 NC_001847.1 + 14662 0.69 0.470136
Target:  5'- -uGCGAGCGGGGcGCGUgUCGgCGUg- -3'
miRNA:   3'- cuCGCUCGCUCC-CGCGgAGCaGCAga -5'
6518 3' -60.9 NC_001847.1 + 101100 0.69 0.479314
Target:  5'- gGGGCGGGC--GGGCGCgUUCGcCGUCa -3'
miRNA:   3'- -CUCGCUCGcuCCCGCG-GAGCaGCAGa -5'
6518 3' -60.9 NC_001847.1 + 76659 0.69 0.479314
Target:  5'- aGGGCGGG-GAGGGCGCCUUuuUCGa-- -3'
miRNA:   3'- -CUCGCUCgCUCCCGCGGAGc-AGCaga -5'
6518 3' -60.9 NC_001847.1 + 60127 0.69 0.479314
Target:  5'- -cGUGAGCGAGGGgGCgUCGgCGcCg -3'
miRNA:   3'- cuCGCUCGCUCCCgCGgAGCaGCaGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.