miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6518 3' -60.9 NC_001847.1 + 82660 0.67 0.585063
Target:  5'- -cGCGAGCGcGGcGCGCCgCGcUCGUgCUg -3'
miRNA:   3'- cuCGCUCGCuCC-CGCGGaGC-AGCA-GA- -5'
6518 3' -60.9 NC_001847.1 + 22524 0.69 0.497926
Target:  5'- aGGGC-AGCGGGGGUGCCcuacagGUCGUUg -3'
miRNA:   3'- -CUCGcUCGCUCCCGCGGag----CAGCAGa -5'
6518 3' -60.9 NC_001847.1 + 2469 0.68 0.516855
Target:  5'- cGAGCGGGCGGcGGCGCCccCGcCGcCg -3'
miRNA:   3'- -CUCGCUCGCUcCCGCGGa-GCaGCaGa -5'
6518 3' -60.9 NC_001847.1 + 48829 0.68 0.536066
Target:  5'- cGGGCcuugccgcGCGGGGGCGCCUCGgccgCG-Cg -3'
miRNA:   3'- -CUCGcu------CGCUCCCGCGGAGCa---GCaGa -5'
6518 3' -60.9 NC_001847.1 + 13121 0.68 0.545766
Target:  5'- gGGGCGcGCGGGcGGCGCCgCGcCGcCUg -3'
miRNA:   3'- -CUCGCuCGCUC-CCGCGGaGCaGCaGA- -5'
6518 3' -60.9 NC_001847.1 + 9518 0.68 0.545766
Target:  5'- cGAGcCGAGCGGGcGGCGCgCUag-CGUCc -3'
miRNA:   3'- -CUC-GCUCGCUC-CCGCG-GAgcaGCAGa -5'
6518 3' -60.9 NC_001847.1 + 42065 0.68 0.545766
Target:  5'- cGGGCGcGCGcGGGgGCCUaCG-CGUCg -3'
miRNA:   3'- -CUCGCuCGCuCCCgCGGA-GCaGCAGa -5'
6518 3' -60.9 NC_001847.1 + 66335 0.68 0.545766
Target:  5'- cGGCGGGUGGggcgcGGGCGCCgccguggCGaUCGUCc -3'
miRNA:   3'- cUCGCUCGCU-----CCCGCGGa------GC-AGCAGa -5'
6518 3' -60.9 NC_001847.1 + 28643 0.68 0.545766
Target:  5'- -cGCGGGUGAGGcuaacgcuuuuGCGCgCUCGUCG-Ca -3'
miRNA:   3'- cuCGCUCGCUCC-----------CGCG-GAGCAGCaGa -5'
6518 3' -60.9 NC_001847.1 + 103572 0.69 0.496988
Target:  5'- aGGGCGAGgccggcccgccgcCGGcGGCGCCggccUCGUCGUCg -3'
miRNA:   3'- -CUCGCUC-------------GCUcCCGCGG----AGCAGCAGa -5'
6518 3' -60.9 NC_001847.1 + 101100 0.69 0.479314
Target:  5'- gGGGCGGGC--GGGCGCgUUCGcCGUCa -3'
miRNA:   3'- -CUCGCUCGcuCCCGCG-GAGCaGCAGa -5'
6518 3' -60.9 NC_001847.1 + 76659 0.69 0.479314
Target:  5'- aGGGCGGG-GAGGGCGCCUUuuUCGa-- -3'
miRNA:   3'- -CUCGCUCgCUCCCGCGGAGc-AGCaga -5'
6518 3' -60.9 NC_001847.1 + 77418 0.76 0.179405
Target:  5'- cGAGaCGGGCGAGGGC--UUCGUCGUCg -3'
miRNA:   3'- -CUC-GCUCGCUCCCGcgGAGCAGCAGa -5'
6518 3' -60.9 NC_001847.1 + 5024 0.76 0.188405
Target:  5'- -cGCGcGCGAGGGCGCuCUCGuacUCGUCc -3'
miRNA:   3'- cuCGCuCGCUCCCGCG-GAGC---AGCAGa -5'
6518 3' -60.9 NC_001847.1 + 84539 0.74 0.251073
Target:  5'- uGGCGGGCGGGGcggggcguGCGCCUCGuacacggccuccUCGUCg -3'
miRNA:   3'- cUCGCUCGCUCC--------CGCGGAGC------------AGCAGa -5'
6518 3' -60.9 NC_001847.1 + 48641 0.72 0.314924
Target:  5'- cGGCG-GCGGGGcGCcgccgcccccgcaGCCUCGUCGUCc -3'
miRNA:   3'- cUCGCuCGCUCC-CG-------------CGGAGCAGCAGa -5'
6518 3' -60.9 NC_001847.1 + 20263 0.71 0.400215
Target:  5'- aGAGCGAgacgGCGAGgucGGCGCCgcgCGUCGg-- -3'
miRNA:   3'- -CUCGCU----CGCUC---CCGCGGa--GCAGCaga -5'
6518 3' -60.9 NC_001847.1 + 17592 0.7 0.425665
Target:  5'- cGGGCGGggcccGCGgaaaGGGGUugcgcacgGCCUCGUCGUCg -3'
miRNA:   3'- -CUCGCU-----CGC----UCCCG--------CGGAGCAGCAGa -5'
6518 3' -60.9 NC_001847.1 + 20746 0.7 0.443158
Target:  5'- cGGCG-GUGAGGcGgGCCUCGccuUCGUCg -3'
miRNA:   3'- cUCGCuCGCUCC-CgCGGAGC---AGCAGa -5'
6518 3' -60.9 NC_001847.1 + 60127 0.69 0.479314
Target:  5'- -cGUGAGCGAGGGgGCgUCGgCGcCg -3'
miRNA:   3'- cuCGCUCGCUCCCgCGgAGCaGCaGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.