miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6518 3' -60.9 NC_001847.1 + 759 0.69 0.496988
Target:  5'- aGGGCGAGgccggcccgccgcCGGcGGCGCCggccUCGUCGUCg -3'
miRNA:   3'- -CUCGCUC-------------GCUcCCGCGG----AGCAGCAGa -5'
6518 3' -60.9 NC_001847.1 + 2469 0.68 0.516855
Target:  5'- cGAGCGGGCGGcGGCGCCccCGcCGcCg -3'
miRNA:   3'- -CUCGCUCGCUcCCGCGGa-GCaGCaGa -5'
6518 3' -60.9 NC_001847.1 + 2752 1.06 0.001454
Target:  5'- gGAGCGAGCGAGGGCGCCUCGUCGUCUu -3'
miRNA:   3'- -CUCGCUCGCUCCCGCGGAGCAGCAGA- -5'
6518 3' -60.9 NC_001847.1 + 3970 0.66 0.664764
Target:  5'- cGGCG-GCGAGGGCGCCgggggcCGggCG-Cg -3'
miRNA:   3'- cUCGCuCGCUCCCGCGGa-----GCa-GCaGa -5'
6518 3' -60.9 NC_001847.1 + 5024 0.76 0.188405
Target:  5'- -cGCGcGCGAGGGCGCuCUCGuacUCGUCc -3'
miRNA:   3'- cuCGCuCGCUCCCGCG-GAGC---AGCAGa -5'
6518 3' -60.9 NC_001847.1 + 9518 0.68 0.545766
Target:  5'- cGAGcCGAGCGGGcGGCGCgCUag-CGUCc -3'
miRNA:   3'- -CUC-GCUCGCUC-CCGCG-GAgcaGCAGa -5'
6518 3' -60.9 NC_001847.1 + 12346 0.66 0.65481
Target:  5'- uGGUGAGCGGuGGGCcuGgCUCGggagCGUCg -3'
miRNA:   3'- cUCGCUCGCU-CCCG--CgGAGCa---GCAGa -5'
6518 3' -60.9 NC_001847.1 + 12924 0.67 0.594984
Target:  5'- -cGCc-GCGGGGGCGCgCgUGUCGUCg -3'
miRNA:   3'- cuCGcuCGCUCCCGCG-GaGCAGCAGa -5'
6518 3' -60.9 NC_001847.1 + 13121 0.68 0.545766
Target:  5'- gGGGCGcGCGGGcGGCGCCgCGcCGcCUg -3'
miRNA:   3'- -CUCGCuCGCUC-CCGCGGaGCaGCaGA- -5'
6518 3' -60.9 NC_001847.1 + 13871 0.7 0.452055
Target:  5'- uGGCGAGgGGGGGCGCCUUugGcCGg-- -3'
miRNA:   3'- cUCGCUCgCUCCCGCGGAG--CaGCaga -5'
6518 3' -60.9 NC_001847.1 + 14230 0.66 0.64384
Target:  5'- gGGGCGuGGUGAGGGCaaacgccgagcccGCuCUCGUCG-Cg -3'
miRNA:   3'- -CUCGC-UCGCUCCCG-------------CG-GAGCAGCaGa -5'
6518 3' -60.9 NC_001847.1 + 14662 0.69 0.470136
Target:  5'- -uGCGAGCGGGGcGCGUgUCGgCGUg- -3'
miRNA:   3'- cuCGCUCGCUCC-CGCGgAGCaGCAga -5'
6518 3' -60.9 NC_001847.1 + 17592 0.7 0.425665
Target:  5'- cGGGCGGggcccGCGgaaaGGGGUugcgcacgGCCUCGUCGUCg -3'
miRNA:   3'- -CUCGCU-----CGC----UCCCG--------CGGAGCAGCAGa -5'
6518 3' -60.9 NC_001847.1 + 17808 0.68 0.565326
Target:  5'- cAGCGGGCggGAGGGCGCCaugccagugCGgcgcaCGUCg -3'
miRNA:   3'- cUCGCUCG--CUCCCGCGGa--------GCa----GCAGa -5'
6518 3' -60.9 NC_001847.1 + 18080 0.67 0.60493
Target:  5'- aGGGCGgaGGCGAGGGCgaggcuuccGCCUCcUCGg-- -3'
miRNA:   3'- -CUCGC--UCGCUCCCG---------CGGAGcAGCaga -5'
6518 3' -60.9 NC_001847.1 + 19617 0.67 0.60493
Target:  5'- cGAGCucGGGCccGGGGCGCCggCGUCGgcgCg -3'
miRNA:   3'- -CUCG--CUCGc-UCCCGCGGa-GCAGCa--Ga -5'
6518 3' -60.9 NC_001847.1 + 20263 0.71 0.400215
Target:  5'- aGAGCGAgacgGCGAGgucGGCGCCgcgCGUCGg-- -3'
miRNA:   3'- -CUCGCU----CGCUC---CCGCGGa--GCAGCaga -5'
6518 3' -60.9 NC_001847.1 + 20746 0.7 0.443158
Target:  5'- cGGCG-GUGAGGcGgGCCUCGccuUCGUCg -3'
miRNA:   3'- cUCGCuCGCUCC-CgCGGAGC---AGCAGa -5'
6518 3' -60.9 NC_001847.1 + 22524 0.69 0.497926
Target:  5'- aGGGC-AGCGGGGGUGCCcuacagGUCGUUg -3'
miRNA:   3'- -CUCGcUCGCUCCCGCGGag----CAGCAGa -5'
6518 3' -60.9 NC_001847.1 + 28643 0.68 0.545766
Target:  5'- -cGCGGGUGAGGcuaacgcuuuuGCGCgCUCGUCG-Ca -3'
miRNA:   3'- cuCGCUCGCUCC-----------CGCG-GAGCAGCaGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.