miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
652 3' -57.9 AC_000017.1 + 12410 0.66 0.461563
Target:  5'- gGCCGGacGGcuggCUcuGCAG-CGCCGCCc -3'
miRNA:   3'- -CGGCCauUCa---GGuuCGUCgGCGGCGG- -5'
652 3' -57.9 AC_000017.1 + 10928 0.66 0.44162
Target:  5'- cCCGGUucGAGUCuCGGGcCGGCCGgaCUGCg -3'
miRNA:   3'- cGGCCA--UUCAG-GUUC-GUCGGC--GGCGg -5'
652 3' -57.9 AC_000017.1 + 3781 0.66 0.44162
Target:  5'- cGCCGuugGAGaCU--GCAGCCuccGCCGCCg -3'
miRNA:   3'- -CGGCca-UUCaGGuuCGUCGG---CGGCGG- -5'
652 3' -57.9 AC_000017.1 + 9565 0.66 0.431833
Target:  5'- cCCGGUuauGGGUUggCGGGgGGCUGCCGUg -3'
miRNA:   3'- cGGCCA---UUCAG--GUUCgUCGGCGGCGg -5'
652 3' -57.9 AC_000017.1 + 9553 0.67 0.412646
Target:  5'- cGCCGucaccGAGaCCAuGC-GCCGUCGCCg -3'
miRNA:   3'- -CGGCca---UUCaGGUuCGuCGGCGGCGG- -5'
652 3' -57.9 AC_000017.1 + 15212 0.67 0.393995
Target:  5'- gGCCGaGgcAGcggCCGA--AGCUGCCGCCc -3'
miRNA:   3'- -CGGC-CauUCa--GGUUcgUCGGCGGCGG- -5'
652 3' -57.9 AC_000017.1 + 15096 0.68 0.367064
Target:  5'- gGCgCGG-AAGagaacUCCAacgcGGCAGCCGCgGCa -3'
miRNA:   3'- -CG-GCCaUUC-----AGGU----UCGUCGGCGgCGg -5'
652 3' -57.9 AC_000017.1 + 26191 0.68 0.367064
Target:  5'- cGCCGGacuggGGGUCCAAGUAaacCCcCCGUCc -3'
miRNA:   3'- -CGGCCa----UUCAGGUUCGUc--GGcGGCGG- -5'
652 3' -57.9 AC_000017.1 + 22082 0.68 0.357512
Target:  5'- cGCUGGaaAAGUCCAcccaaagcgugcAGgGGCCcaacucgGCCGCCu -3'
miRNA:   3'- -CGGCCa-UUCAGGU------------UCgUCGG-------CGGCGG- -5'
652 3' -57.9 AC_000017.1 + 13262 0.68 0.353227
Target:  5'- cGCCGGUuGGUCagCAGGUAGUUcaggguugccuccagGCUGCCc -3'
miRNA:   3'- -CGGCCAuUCAG--GUUCGUCGG---------------CGGCGG- -5'
652 3' -57.9 AC_000017.1 + 14304 0.68 0.335634
Target:  5'- -aCGGcGGGUCCAGGggagcauCGaagggggaacccagcGCCGCCGCCa -3'
miRNA:   3'- cgGCCaUUCAGGUUC-------GU---------------CGGCGGCGG- -5'
652 3' -57.9 AC_000017.1 + 17654 0.68 0.332356
Target:  5'- aGCCGGUcuuuguGGUUCuuGCAGauauggcccucacCUGCCGCCu -3'
miRNA:   3'- -CGGCCAu-----UCAGGuuCGUC-------------GGCGGCGG- -5'
652 3' -57.9 AC_000017.1 + 17865 0.68 0.325067
Target:  5'- cGCCGcGcaugcgacGGUgCGAcGCGcGCCGCCGCCg -3'
miRNA:   3'- -CGGC-Cau------UCAgGUU-CGU-CGGCGGCGG- -5'
652 3' -57.9 AC_000017.1 + 846 0.69 0.317108
Target:  5'- cCCGGc-AGcCCGAGCAGCCGgaGCa -3'
miRNA:   3'- cGGCCauUCaGGUUCGUCGGCggCGg -5'
652 3' -57.9 AC_000017.1 + 6487 0.69 0.317108
Target:  5'- cGCUcGUuGGUCCAgcagaGGCGGCCGCCcuuGCg -3'
miRNA:   3'- -CGGcCAuUCAGGU-----UCGUCGGCGG---CGg -5'
652 3' -57.9 AC_000017.1 + 15157 0.69 0.317108
Target:  5'- uGCCGcGUugGAGUUCucuuccGC-GCCGCUGCCa -3'
miRNA:   3'- -CGGC-CA--UUCAGGuu----CGuCGGCGGCGG- -5'
652 3' -57.9 AC_000017.1 + 10418 0.69 0.279525
Target:  5'- cGCUGGccccUCUAccgcCAGCCGCCGCCg -3'
miRNA:   3'- -CGGCCauucAGGUuc--GUCGGCGGCGG- -5'
652 3' -57.9 AC_000017.1 + 11558 0.7 0.272448
Target:  5'- -gCGGUua--CCAGGuCGGCgGCCGCCa -3'
miRNA:   3'- cgGCCAuucaGGUUC-GUCGgCGGCGG- -5'
652 3' -57.9 AC_000017.1 + 12699 0.7 0.272448
Target:  5'- aGCCGGUccAGGUUgGucuGCAcGuuGCCGCUg -3'
miRNA:   3'- -CGGCCA--UUCAGgUu--CGU-CggCGGCGG- -5'
652 3' -57.9 AC_000017.1 + 3569 0.7 0.271748
Target:  5'- --aGGUGggGGUCUcauguaguuuuguAucuguuuugcAGCAGCCGCCGCCa -3'
miRNA:   3'- cggCCAU--UCAGG-------------U----------UCGUCGGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.