Results 21 - 40 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
652 | 5' | -52.6 | AC_000017.1 | + | 9307 | 0.69 | 0.529554 |
Target: 5'- uGAGCucgGCGACAgugucgcgcaccucGCGCUcaAAGGCUACa -3' miRNA: 3'- uCUCGu--UGUUGU--------------CGCGG--UUCCGAUGg -5' |
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652 | 5' | -52.6 | AC_000017.1 | + | 25387 | 0.69 | 0.544293 |
Target: 5'- uGGGCGugugGCAGCAGUGCCuggagGAGcGCaACCu -3' miRNA: 3'- uCUCGU----UGUUGUCGCGG-----UUC-CGaUGG- -5' |
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652 | 5' | -52.6 | AC_000017.1 | + | 6707 | 0.69 | 0.555721 |
Target: 5'- uGGGguGgGugAGCGCgGAGGCguacaUGCCg -3' miRNA: 3'- uCUCguUgUugUCGCGgUUCCG-----AUGG- -5' |
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652 | 5' | -52.6 | AC_000017.1 | + | 15525 | 0.69 | 0.555721 |
Target: 5'- cAGAuCAGCAACuuuccgguggugGGCGCCGAGcuGUUGCCc -3' miRNA: 3'- -UCUcGUUGUUG------------UCGCGGUUC--CGAUGG- -5' |
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652 | 5' | -52.6 | AC_000017.1 | + | 21734 | 0.69 | 0.555721 |
Target: 5'- aAGaAGCAagcaacaucaACAACAGCuGCCGccauGGGCU-CCa -3' miRNA: 3'- -UC-UCGU----------UGUUGUCG-CGGU----UCCGAuGG- -5' |
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652 | 5' | -52.6 | AC_000017.1 | + | 15196 | 0.68 | 0.577615 |
Target: 5'- aGGAGaAGCGcgcugaggccgagGCAGCgGCCGAaGCUGCCg -3' miRNA: 3'- -UCUCgUUGU-------------UGUCG-CGGUUcCGAUGG- -5' |
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652 | 5' | -52.6 | AC_000017.1 | + | 20884 | 0.68 | 0.590379 |
Target: 5'- --cGCAACuggGCGGCuuuCCGAGGCUggGCCu -3' miRNA: 3'- ucuCGUUGu--UGUCGc--GGUUCCGA--UGG- -5' |
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652 | 5' | -52.6 | AC_000017.1 | + | 16867 | 0.68 | 0.602025 |
Target: 5'- uGAGCAGgcCAACgAGCGCCucGGGGaguuUGCCu -3' miRNA: 3'- uCUCGUU--GUUG-UCGCGG--UUCCg---AUGG- -5' |
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652 | 5' | -52.6 | AC_000017.1 | + | 3982 | 0.68 | 0.602025 |
Target: 5'- uGGAGCugcGCAGCAGguuucUGCCcugAAGGCUuCCu -3' miRNA: 3'- -UCUCGu--UGUUGUC-----GCGG---UUCCGAuGG- -5' |
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652 | 5' | -52.6 | AC_000017.1 | + | 17584 | 0.68 | 0.602025 |
Target: 5'- -cGGCGACGGCGGCGgCG-GGUU-CCa -3' miRNA: 3'- ucUCGUUGUUGUCGCgGUuCCGAuGG- -5' |
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652 | 5' | -52.6 | AC_000017.1 | + | 1063 | 0.68 | 0.602025 |
Target: 5'- aAGAcCuGCAACcGUGCCcGGGCUGCUc -3' miRNA: 3'- -UCUcGuUGUUGuCGCGGuUCCGAUGG- -5' |
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652 | 5' | -52.6 | AC_000017.1 | + | 17330 | 0.68 | 0.602025 |
Target: 5'- --cGCGGCAucugcCAcCGCCGAGGCgACCg -3' miRNA: 3'- ucuCGUUGUu----GUcGCGGUUCCGaUGG- -5' |
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652 | 5' | -52.6 | AC_000017.1 | + | 14085 | 0.68 | 0.613699 |
Target: 5'- uGGGGCGA-AGguGCGCaaacGGGUUGCCa -3' miRNA: 3'- -UCUCGUUgUUguCGCGgu--UCCGAUGG- -5' |
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652 | 5' | -52.6 | AC_000017.1 | + | 6444 | 0.67 | 0.625392 |
Target: 5'- cAGGGUGACAAgguCAaCGCUGGuGGCUACCu -3' miRNA: 3'- -UCUCGUUGUU---GUcGCGGUU-CCGAUGG- -5' |
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652 | 5' | -52.6 | AC_000017.1 | + | 15077 | 0.67 | 0.625392 |
Target: 5'- -cGGCAACAACAGUGgCAGcGGCg--- -3' miRNA: 3'- ucUCGUUGUUGUCGCgGUU-CCGaugg -5' |
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652 | 5' | -52.6 | AC_000017.1 | + | 15521 | 0.67 | 0.635922 |
Target: 5'- cGGGCAACGAcCAGUauaccugcuccgaGCCGcAGGUUACg -3' miRNA: 3'- uCUCGUUGUU-GUCG-------------CGGU-UCCGAUGg -5' |
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652 | 5' | -52.6 | AC_000017.1 | + | 9751 | 0.67 | 0.637092 |
Target: 5'- cGGGCGGCAgcggGCGGCGgUCGGGGUUGu- -3' miRNA: 3'- uCUCGUUGU----UGUCGC-GGUUCCGAUgg -5' |
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652 | 5' | -52.6 | AC_000017.1 | + | 10349 | 0.67 | 0.647617 |
Target: 5'- aAGuGCGGCGGCGGCuggcgguagagggGCCAgcguaGGGUgGCCg -3' miRNA: 3'- -UCuCGUUGUUGUCG-------------CGGU-----UCCGaUGG- -5' |
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652 | 5' | -52.6 | AC_000017.1 | + | 8680 | 0.67 | 0.648786 |
Target: 5'- aGGAGCuGguGCuGCGCacgGAGGUUGCUg -3' miRNA: 3'- -UCUCGuUguUGuCGCGg--UUCCGAUGG- -5' |
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652 | 5' | -52.6 | AC_000017.1 | + | 17393 | 0.67 | 0.648786 |
Target: 5'- cGAGgAAguACGGCGCCGccAGcgcGCUACUg -3' miRNA: 3'- uCUCgUUguUGUCGCGGU--UC---CGAUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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