miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
652 5' -52.6 AC_000017.1 + 26572 1.13 0.00046
Target:  5'- aAGAGCAACAACAGCGCCAAGGCUACCg -3'
miRNA:   3'- -UCUCGUUGUUGUCGCGGUUCCGAUGG- -5'
652 5' -52.6 AC_000017.1 + 26765 0.79 0.131592
Target:  5'- cGGcAGCAACAGCAGCgGCCAcacagaagcaaAGGCgACCg -3'
miRNA:   3'- -UC-UCGUUGUUGUCG-CGGU-----------UCCGaUGG- -5'
652 5' -52.6 AC_000017.1 + 11094 0.74 0.268365
Target:  5'- aAGAGCAAgAGCAGCGgCAgacaugcaGGGC-ACCc -3'
miRNA:   3'- -UCUCGUUgUUGUCGCgGU--------UCCGaUGG- -5'
652 5' -52.6 AC_000017.1 + 14197 0.74 0.275716
Target:  5'- gAGAGCGugGugagcGCGGCGCCAGuGGCgGCg -3'
miRNA:   3'- -UCUCGUugU-----UGUCGCGGUU-CCGaUGg -5'
652 5' -52.6 AC_000017.1 + 13062 0.73 0.314886
Target:  5'- uAGcAGCAGCAACAGCGCgAguuGGGCgucaGCa -3'
miRNA:   3'- -UC-UCGUUGUUGUCGCGgU---UCCGa---UGg -5'
652 5' -52.6 AC_000017.1 + 33256 0.73 0.331692
Target:  5'- uAGGGCGguggugcuGCAGCAGCGCgCGAauaaacuGCUGCCg -3'
miRNA:   3'- -UCUCGU--------UGUUGUCGCG-GUUc------CGAUGG- -5'
652 5' -52.6 AC_000017.1 + 2154 0.73 0.331692
Target:  5'- aGGAGCAGCAGCAGCaacagcagcaGCagGAGGaaGCCa -3'
miRNA:   3'- -UCUCGUUGUUGUCG----------CGg-UUCCgaUGG- -5'
652 5' -52.6 AC_000017.1 + 29282 0.72 0.358119
Target:  5'- aAGaAGCGGCGGCAGCauGCUAAGGCa--- -3'
miRNA:   3'- -UC-UCGUUGUUGUCG--CGGUUCCGaugg -5'
652 5' -52.6 AC_000017.1 + 9435 0.72 0.385986
Target:  5'- -cGGCGACGACGGCGCaccggGAGGCggucgACa -3'
miRNA:   3'- ucUCGUUGUUGUCGCGg----UUCCGa----UGg -5'
652 5' -52.6 AC_000017.1 + 5552 0.72 0.385986
Target:  5'- aAGGGCAaGCuGC-GCGCCAAGGgccaUGCCg -3'
miRNA:   3'- -UCUCGU-UGuUGuCGCGGUUCCg---AUGG- -5'
652 5' -52.6 AC_000017.1 + 4976 0.71 0.395588
Target:  5'- gAGAGCuGCAGCuGCGUCAucccugagcaAGGggGCCa -3'
miRNA:   3'- -UCUCGuUGUUGuCGCGGU----------UCCgaUGG- -5'
652 5' -52.6 AC_000017.1 + 13596 0.71 0.405342
Target:  5'- uAGAGUuGCAACAGCGCgagcaggcaGAGGCggcGCUg -3'
miRNA:   3'- -UCUCGuUGUUGUCGCGg--------UUCCGa--UGG- -5'
652 5' -52.6 AC_000017.1 + 26531 0.71 0.405342
Target:  5'- cGGGCAGugcCGGCGGCGCCugaggagcgGAGGUUguaGCCa -3'
miRNA:   3'- uCUCGUU---GUUGUCGCGG---------UUCCGA---UGG- -5'
652 5' -52.6 AC_000017.1 + 12688 0.71 0.415247
Target:  5'- uGGcGCAGCGugAGCGCgcgcagcagCAGGGCaACCu -3'
miRNA:   3'- -UCuCGUUGUugUCGCG---------GUUCCGaUGG- -5'
652 5' -52.6 AC_000017.1 + 3857 0.71 0.425299
Target:  5'- -cAGCGGCugaAGCGGCgGCgGAGGCUGCa -3'
miRNA:   3'- ucUCGUUG---UUGUCG-CGgUUCCGAUGg -5'
652 5' -52.6 AC_000017.1 + 17032 0.71 0.425299
Target:  5'- cGGGCAGCAccugcuGCAGUGUCAcGGGCUuuagGCUa -3'
miRNA:   3'- uCUCGUUGU------UGUCGCGGU-UCCGA----UGG- -5'
652 5' -52.6 AC_000017.1 + 2192 0.7 0.477629
Target:  5'- -aGGCGGCGGCGGCGgCAGGaGCagaGCCc -3'
miRNA:   3'- ucUCGUUGUUGUCGCgGUUC-CGa--UGG- -5'
652 5' -52.6 AC_000017.1 + 19248 0.69 0.510508
Target:  5'- uAGAGCGuuguaGGCAGUGCCGgaguaGGGCUuaaaagugggGCCc -3'
miRNA:   3'- -UCUCGUug---UUGUCGCGGU-----UCCGA----------UGG- -5'
652 5' -52.6 AC_000017.1 + 11812 0.69 0.510508
Target:  5'- cGAGCAGcCAGCGGC-CCucGGGCUcuACUa -3'
miRNA:   3'- uCUCGUU-GUUGUCGcGGu-UCCGA--UGG- -5'
652 5' -52.6 AC_000017.1 + 8474 0.69 0.521678
Target:  5'- aGGGGCugguugguGGCGGCGUCGAuGGCUugCa -3'
miRNA:   3'- -UCUCGuug-----UUGUCGCGGUU-CCGAugG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.