miRNA display CGI


Results 1 - 20 of 63 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
652 5' -52.6 AC_000017.1 + 856 0.66 0.729444
Target:  5'- cGAGCAGCcggAGCAGagaGCCuuGGGUccgguuucuaUGCCa -3'
miRNA:   3'- uCUCGUUG---UUGUCg--CGGu-UCCG----------AUGG- -5'
652 5' -52.6 AC_000017.1 + 1063 0.68 0.602025
Target:  5'- aAGAcCuGCAACcGUGCCcGGGCUGCUc -3'
miRNA:   3'- -UCUcGuUGUUGuCGCGGuUCCGAUGG- -5'
652 5' -52.6 AC_000017.1 + 2154 0.73 0.331692
Target:  5'- aGGAGCAGCAGCAGCaacagcagcaGCagGAGGaaGCCa -3'
miRNA:   3'- -UCUCGUUGUUGUCG----------CGg-UUCCgaUGG- -5'
652 5' -52.6 AC_000017.1 + 2192 0.7 0.477629
Target:  5'- -aGGCGGCGGCGGCGgCAGGaGCagaGCCc -3'
miRNA:   3'- ucUCGUUGUUGUCGCgGUUC-CGa--UGG- -5'
652 5' -52.6 AC_000017.1 + 3857 0.71 0.425299
Target:  5'- -cAGCGGCugaAGCGGCgGCgGAGGCUGCa -3'
miRNA:   3'- ucUCGUUG---UUGUCG-CGgUUCCGAUGg -5'
652 5' -52.6 AC_000017.1 + 3982 0.68 0.602025
Target:  5'- uGGAGCugcGCAGCAGguuucUGCCcugAAGGCUuCCu -3'
miRNA:   3'- -UCUCGu--UGUUGUC-----GCGG---UUCCGAuGG- -5'
652 5' -52.6 AC_000017.1 + 4976 0.71 0.395588
Target:  5'- gAGAGCuGCAGCuGCGUCAucccugagcaAGGggGCCa -3'
miRNA:   3'- -UCUCGuUGUUGuCGCGGU----------UCCgaUGG- -5'
652 5' -52.6 AC_000017.1 + 5471 0.67 0.67211
Target:  5'- cAGGGCGAagacCGGCAGCGCUucaGC-ACCa -3'
miRNA:   3'- -UCUCGUU----GUUGUCGCGGuucCGaUGG- -5'
652 5' -52.6 AC_000017.1 + 5552 0.72 0.385986
Target:  5'- aAGGGCAaGCuGC-GCGCCAAGGgccaUGCCg -3'
miRNA:   3'- -UCUCGU-UGuUGuCGCGGUUCCg---AUGG- -5'
652 5' -52.6 AC_000017.1 + 6116 0.67 0.67211
Target:  5'- cGGGCAugAcuuCuGCGCUAAGGUUGUCa -3'
miRNA:   3'- uCUCGUugUu--GuCGCGGUUCCGAUGG- -5'
652 5' -52.6 AC_000017.1 + 6444 0.67 0.625392
Target:  5'- cAGGGUGACAAgguCAaCGCUGGuGGCUACCu -3'
miRNA:   3'- -UCUCGUUGUU---GUcGCGGUU-CCGAUGG- -5'
652 5' -52.6 AC_000017.1 + 6553 0.66 0.733934
Target:  5'- aAGGGCGGCcgccucugcuggaccAACgAGCGCCuacgcggaGAGGUaGCCa -3'
miRNA:   3'- -UCUCGUUG---------------UUG-UCGCGG--------UUCCGaUGG- -5'
652 5' -52.6 AC_000017.1 + 6707 0.69 0.555721
Target:  5'- uGGGguGgGugAGCGCgGAGGCguacaUGCCg -3'
miRNA:   3'- uCUCguUgUugUCGCGgUUCCG-----AUGG- -5'
652 5' -52.6 AC_000017.1 + 8474 0.69 0.521678
Target:  5'- aGGGGCugguugguGGCGGCGUCGAuGGCUugCa -3'
miRNA:   3'- -UCUCGuug-----UUGUCGCGGUU-CCGAugG- -5'
652 5' -52.6 AC_000017.1 + 8680 0.67 0.648786
Target:  5'- aGGAGCuGguGCuGCGCacgGAGGUUGCUg -3'
miRNA:   3'- -UCUCGuUguUGuCGCGg--UUCCGAUGG- -5'
652 5' -52.6 AC_000017.1 + 9307 0.69 0.529554
Target:  5'- uGAGCucgGCGACAgugucgcgcaccucGCGCUcaAAGGCUACa -3'
miRNA:   3'- uCUCGu--UGUUGU--------------CGCGG--UUCCGAUGg -5'
652 5' -52.6 AC_000017.1 + 9435 0.72 0.385986
Target:  5'- -cGGCGACGACGGCGCaccggGAGGCggucgACa -3'
miRNA:   3'- ucUCGUUGUUGUCGCGg----UUCCGa----UGg -5'
652 5' -52.6 AC_000017.1 + 9487 0.67 0.66862
Target:  5'- --cGCGGCGACGGCGCauggucucggugacGGCgcgGCCg -3'
miRNA:   3'- ucuCGUUGUUGUCGCGguu-----------CCGa--UGG- -5'
652 5' -52.6 AC_000017.1 + 9751 0.67 0.637092
Target:  5'- cGGGCGGCAgcggGCGGCGgUCGGGGUUGu- -3'
miRNA:   3'- uCUCGUUGU----UGUCGC-GGUUCCGAUgg -5'
652 5' -52.6 AC_000017.1 + 10349 0.67 0.647617
Target:  5'- aAGuGCGGCGGCGGCuggcgguagagggGCCAgcguaGGGUgGCCg -3'
miRNA:   3'- -UCuCGUUGUUGUCG-------------CGGU-----UCCGaUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.