miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
652 5' -52.6 AC_000017.1 + 16867 0.68 0.602025
Target:  5'- uGAGCAGgcCAACgAGCGCCucGGGGaguuUGCCu -3'
miRNA:   3'- uCUCGUU--GUUG-UCGCGG--UUCCg---AUGG- -5'
652 5' -52.6 AC_000017.1 + 9307 0.69 0.529554
Target:  5'- uGAGCucgGCGACAgugucgcgcaccucGCGCUcaAAGGCUACa -3'
miRNA:   3'- uCUCGu--UGUUGU--------------CGCGG--UUCCGAUGg -5'
652 5' -52.6 AC_000017.1 + 25387 0.69 0.544293
Target:  5'- uGGGCGugugGCAGCAGUGCCuggagGAGcGCaACCu -3'
miRNA:   3'- uCUCGU----UGUUGUCGCGG-----UUC-CGaUGG- -5'
652 5' -52.6 AC_000017.1 + 6707 0.69 0.555721
Target:  5'- uGGGguGgGugAGCGCgGAGGCguacaUGCCg -3'
miRNA:   3'- uCUCguUgUugUCGCGgUUCCG-----AUGG- -5'
652 5' -52.6 AC_000017.1 + 21734 0.69 0.555721
Target:  5'- aAGaAGCAagcaacaucaACAACAGCuGCCGccauGGGCU-CCa -3'
miRNA:   3'- -UC-UCGU----------UGUUGUCG-CGGU----UCCGAuGG- -5'
652 5' -52.6 AC_000017.1 + 15525 0.69 0.555721
Target:  5'- cAGAuCAGCAACuuuccgguggugGGCGCCGAGcuGUUGCCc -3'
miRNA:   3'- -UCUcGUUGUUG------------UCGCGGUUC--CGAUGG- -5'
652 5' -52.6 AC_000017.1 + 15196 0.68 0.577615
Target:  5'- aGGAGaAGCGcgcugaggccgagGCAGCgGCCGAaGCUGCCg -3'
miRNA:   3'- -UCUCgUUGU-------------UGUCG-CGGUUcCGAUGG- -5'
652 5' -52.6 AC_000017.1 + 20884 0.68 0.590379
Target:  5'- --cGCAACuggGCGGCuuuCCGAGGCUggGCCu -3'
miRNA:   3'- ucuCGUUGu--UGUCGc--GGUUCCGA--UGG- -5'
652 5' -52.6 AC_000017.1 + 3982 0.68 0.602025
Target:  5'- uGGAGCugcGCAGCAGguuucUGCCcugAAGGCUuCCu -3'
miRNA:   3'- -UCUCGu--UGUUGUC-----GCGG---UUCCGAuGG- -5'
652 5' -52.6 AC_000017.1 + 8474 0.69 0.521678
Target:  5'- aGGGGCugguugguGGCGGCGUCGAuGGCUugCa -3'
miRNA:   3'- -UCUCGuug-----UUGUCGCGGUU-CCGAugG- -5'
652 5' -52.6 AC_000017.1 + 2192 0.7 0.477629
Target:  5'- -aGGCGGCGGCGGCGgCAGGaGCagaGCCc -3'
miRNA:   3'- ucUCGUUGUUGUCGCgGUUC-CGa--UGG- -5'
652 5' -52.6 AC_000017.1 + 12688 0.71 0.415247
Target:  5'- uGGcGCAGCGugAGCGCgcgcagcagCAGGGCaACCu -3'
miRNA:   3'- -UCuCGUUGUugUCGCG---------GUUCCGaUGG- -5'
652 5' -52.6 AC_000017.1 + 26765 0.79 0.131592
Target:  5'- cGGcAGCAACAGCAGCgGCCAcacagaagcaaAGGCgACCg -3'
miRNA:   3'- -UC-UCGUUGUUGUCG-CGGU-----------UCCGaUGG- -5'
652 5' -52.6 AC_000017.1 + 11094 0.74 0.268365
Target:  5'- aAGAGCAAgAGCAGCGgCAgacaugcaGGGC-ACCc -3'
miRNA:   3'- -UCUCGUUgUUGUCGCgGU--------UCCGaUGG- -5'
652 5' -52.6 AC_000017.1 + 14197 0.74 0.275716
Target:  5'- gAGAGCGugGugagcGCGGCGCCAGuGGCgGCg -3'
miRNA:   3'- -UCUCGUugU-----UGUCGCGGUU-CCGaUGg -5'
652 5' -52.6 AC_000017.1 + 33256 0.73 0.331692
Target:  5'- uAGGGCGguggugcuGCAGCAGCGCgCGAauaaacuGCUGCCg -3'
miRNA:   3'- -UCUCGU--------UGUUGUCGCG-GUUc------CGAUGG- -5'
652 5' -52.6 AC_000017.1 + 2154 0.73 0.331692
Target:  5'- aGGAGCAGCAGCAGCaacagcagcaGCagGAGGaaGCCa -3'
miRNA:   3'- -UCUCGUUGUUGUCG----------CGg-UUCCgaUGG- -5'
652 5' -52.6 AC_000017.1 + 9435 0.72 0.385986
Target:  5'- -cGGCGACGACGGCGCaccggGAGGCggucgACa -3'
miRNA:   3'- ucUCGUUGUUGUCGCGg----UUCCGa----UGg -5'
652 5' -52.6 AC_000017.1 + 4976 0.71 0.395588
Target:  5'- gAGAGCuGCAGCuGCGUCAucccugagcaAGGggGCCa -3'
miRNA:   3'- -UCUCGuUGUUGuCGCGGU----------UCCgaUGG- -5'
652 5' -52.6 AC_000017.1 + 13596 0.71 0.405342
Target:  5'- uAGAGUuGCAACAGCGCgagcaggcaGAGGCggcGCUg -3'
miRNA:   3'- -UCUCGuUGUUGUCGCGg--------UUCCGa--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.