miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
653 5' -56.7 AC_000017.1 + 33258 0.66 0.496297
Target:  5'- gGGCGGUGgugcuGCAGCAGCGcgcgaauaaacugcuGCCGCcgccgcuccguccuGCAGGa -3'
miRNA:   3'- -CCGUCGU-----UGUCGUCGC---------------CGGUG--------------UGUCU- -5'
653 5' -56.7 AC_000017.1 + 35535 0.66 0.495228
Target:  5'- -aCAGCGcuuccACAGCGGCaGCCAUaACAGu -3'
miRNA:   3'- ccGUCGU-----UGUCGUCGcCGGUG-UGUCu -5'
653 5' -56.7 AC_000017.1 + 27054 0.66 0.484597
Target:  5'- aGGCAGCuGCGGguGagGGaUCGCAgAGAc -3'
miRNA:   3'- -CCGUCGuUGUCguCg-CC-GGUGUgUCU- -5'
653 5' -56.7 AC_000017.1 + 10012 0.66 0.484596
Target:  5'- uGCGGCGGCGGCGGaguuuGGCCG--UAGGu -3'
miRNA:   3'- cCGUCGUUGUCGUCg----CCGGUguGUCU- -5'
653 5' -56.7 AC_000017.1 + 24652 0.66 0.474075
Target:  5'- cGCAGCcgagcgGACaAGCAGCuGGCCuuGCGGc -3'
miRNA:   3'- cCGUCG------UUG-UCGUCG-CCGGugUGUCu -5'
653 5' -56.7 AC_000017.1 + 17769 0.66 0.467818
Target:  5'- gGGCGGCAugcgucgugcgcaccAcCGGCGGCGG-CGCGCGu- -3'
miRNA:   3'- -CCGUCGU---------------U-GUCGUCGCCgGUGUGUcu -5'
653 5' -56.7 AC_000017.1 + 16219 0.66 0.453385
Target:  5'- cGGCAcugccgcccaacGC-GCGGCGGCGGCCcugcuuaaccGCGCAc- -3'
miRNA:   3'- -CCGU------------CGuUGUCGUCGCCGG----------UGUGUcu -5'
653 5' -56.7 AC_000017.1 + 18707 0.66 0.453385
Target:  5'- gGGCcGCAACGaucgcggaccGCuGGCGGCacgGCGCAGGg -3'
miRNA:   3'- -CCGuCGUUGU----------CG-UCGCCGg--UGUGUCU- -5'
653 5' -56.7 AC_000017.1 + 26530 0.66 0.453385
Target:  5'- gGGCAGUGcCGGCGGCG-CCugaggaGCGGAg -3'
miRNA:   3'- -CCGUCGUuGUCGUCGCcGGug----UGUCU- -5'
653 5' -56.7 AC_000017.1 + 3662 0.67 0.433195
Target:  5'- uGguGCucAUGGCGGCGGCUGCugcaaaACAGAu -3'
miRNA:   3'- cCguCGu-UGUCGUCGCCGGUG------UGUCU- -5'
653 5' -56.7 AC_000017.1 + 33958 0.67 0.423298
Target:  5'- gGGCAGCAGCGGaugauccucCAGUauGGUaGCGCGGGu -3'
miRNA:   3'- -CCGUCGUUGUC---------GUCG--CCGgUGUGUCU- -5'
653 5' -56.7 AC_000017.1 + 6494 0.67 0.423298
Target:  5'- uGGUc-CAGCAGaGGCGGCCGCccuugcgcgaGCAGAa -3'
miRNA:   3'- -CCGucGUUGUCgUCGCCGGUG----------UGUCU- -5'
653 5' -56.7 AC_000017.1 + 27217 0.67 0.403919
Target:  5'- aGGUgcuGGCGcCGGguGUGGCCGCugGaGAu -3'
miRNA:   3'- -CCG---UCGUuGUCguCGCCGGUGugU-CU- -5'
653 5' -56.7 AC_000017.1 + 10203 0.67 0.403918
Target:  5'- uGguGUAAguGCAGuUGGCCAUaACGGAc -3'
miRNA:   3'- cCguCGUUguCGUC-GCCGGUG-UGUCU- -5'
653 5' -56.7 AC_000017.1 + 16515 0.67 0.403918
Target:  5'- uGUAucCAGCGGCGGCGGCgCGCAUcGAa -3'
miRNA:   3'- cCGUc-GUUGUCGUCGCCG-GUGUGuCU- -5'
653 5' -56.7 AC_000017.1 + 28729 0.67 0.394441
Target:  5'- cGCAGCA--GGCGGCaaGCCuaagACACAGAa -3'
miRNA:   3'- cCGUCGUugUCGUCGc-CGG----UGUGUCU- -5'
653 5' -56.7 AC_000017.1 + 26184 0.68 0.384184
Target:  5'- cGCAGCccuauCAGCAGCaGCCGCGggcccuugcuuccCAGGa -3'
miRNA:   3'- cCGUCGuu---GUCGUCGcCGGUGU-------------GUCU- -5'
653 5' -56.7 AC_000017.1 + 17462 0.68 0.37958
Target:  5'- gGGCAGUAGCgcgcuGGCGGCG-CCguacuuccucgaacgGCGCGGAc -3'
miRNA:   3'- -CCGUCGUUG-----UCGUCGCcGG---------------UGUGUCU- -5'
653 5' -56.7 AC_000017.1 + 27511 0.68 0.375924
Target:  5'- gGGC-GCAGCuuGCgGGCGGCUuucguCACAGGg -3'
miRNA:   3'- -CCGuCGUUGu-CG-UCGCCGGu----GUGUCU- -5'
653 5' -56.7 AC_000017.1 + 9817 0.68 0.375924
Target:  5'- aGGCGGUcuugaGACGGCGGaUGGUCG-ACAGAa -3'
miRNA:   3'- -CCGUCG-----UUGUCGUC-GCCGGUgUGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.