miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6530 3' -55.5 NC_001847.1 + 12761 1.09 0.003138
Target:  5'- uUCUUCGCGCAGAUGUCGCUGGACGCGc -3'
miRNA:   3'- -AGAAGCGCGUCUACAGCGACCUGCGC- -5'
6530 3' -55.5 NC_001847.1 + 72960 0.79 0.26196
Target:  5'- gUCUUCGCGCGGAuUGgggaCGC-GGACGCGc -3'
miRNA:   3'- -AGAAGCGCGUCU-ACa---GCGaCCUGCGC- -5'
6530 3' -55.5 NC_001847.1 + 32771 0.79 0.281377
Target:  5'- gCUUCGCGaCGGccgGcCGCUGGACGCGc -3'
miRNA:   3'- aGAAGCGC-GUCua-CaGCGACCUGCGC- -5'
6530 3' -55.5 NC_001847.1 + 33442 0.78 0.309018
Target:  5'- cUCggCGuCGCGGgcGUCGCUGGAgGCGa -3'
miRNA:   3'- -AGaaGC-GCGUCuaCAGCGACCUgCGC- -5'
6530 3' -55.5 NC_001847.1 + 37465 0.75 0.430471
Target:  5'- --cUCGCGguGGacUCGCUGGGCGCa -3'
miRNA:   3'- agaAGCGCguCUacAGCGACCUGCGc -5'
6530 3' -55.5 NC_001847.1 + 77795 0.74 0.476742
Target:  5'- ----aGCGCGGAUGUCuGgaGGACGUGg -3'
miRNA:   3'- agaagCGCGUCUACAG-CgaCCUGCGC- -5'
6530 3' -55.5 NC_001847.1 + 66181 0.74 0.505658
Target:  5'- ---cCGCGCGGGccgCGCUGGACGCc -3'
miRNA:   3'- agaaGCGCGUCUacaGCGACCUGCGc -5'
6530 3' -55.5 NC_001847.1 + 78525 0.73 0.56553
Target:  5'- --cUCGCGCGGcugGUGUCGCcGGAagaCGCGa -3'
miRNA:   3'- agaAGCGCGUC---UACAGCGaCCU---GCGC- -5'
6530 3' -55.5 NC_001847.1 + 38019 0.72 0.616766
Target:  5'- --cUCGCGCGGGUGcUG-UGGGCGCGc -3'
miRNA:   3'- agaAGCGCGUCUACaGCgACCUGCGC- -5'
6530 3' -55.5 NC_001847.1 + 33739 0.72 0.627078
Target:  5'- ---aCGCGCAGAgcUGUaccagCGcCUGGACGCGc -3'
miRNA:   3'- agaaGCGCGUCU--ACA-----GC-GACCUGCGC- -5'
6530 3' -55.5 NC_001847.1 + 125066 0.71 0.647706
Target:  5'- cUCccgCGCGCGGcgGggCGCUGGgcccGCGCGg -3'
miRNA:   3'- -AGaa-GCGCGUCuaCa-GCGACC----UGCGC- -5'
6530 3' -55.5 NC_001847.1 + 61467 0.71 0.647706
Target:  5'- --gUCGCGCAGcagcgccgcGUCGCUGG-CGCa -3'
miRNA:   3'- agaAGCGCGUCua-------CAGCGACCuGCGc -5'
6530 3' -55.5 NC_001847.1 + 91377 0.71 0.658006
Target:  5'- cUCUaCGCGCAGGUG-CGUaaUGGACGa- -3'
miRNA:   3'- -AGAaGCGCGUCUACaGCG--ACCUGCgc -5'
6530 3' -55.5 NC_001847.1 + 29984 0.71 0.675462
Target:  5'- cCUUCGCGCGGcugcagggcuAUGUCGCcgagacggaagcgcUGGcCGCGu -3'
miRNA:   3'- aGAAGCGCGUC----------UACAGCG--------------ACCuGCGC- -5'
6530 3' -55.5 NC_001847.1 + 74267 0.7 0.70901
Target:  5'- cUCUUCccggGCGCGGccGcccucgCGCUGGACGCc -3'
miRNA:   3'- -AGAAG----CGCGUCuaCa-----GCGACCUGCGc -5'
6530 3' -55.5 NC_001847.1 + 47047 0.7 0.70901
Target:  5'- --cUCGCGguGcGUGUCGCggccGGCGCGg -3'
miRNA:   3'- agaAGCGCguC-UACAGCGac--CUGCGC- -5'
6530 3' -55.5 NC_001847.1 + 90360 0.7 0.70901
Target:  5'- cUUUCGgGCGGcgaccUGCUGGACGCGg -3'
miRNA:   3'- aGAAGCgCGUCuaca-GCGACCUGCGC- -5'
6530 3' -55.5 NC_001847.1 + 66318 0.7 0.719049
Target:  5'- cUCUUCGCggcgcccugcgGCGGGUGgggCGC-GGGCGCc -3'
miRNA:   3'- -AGAAGCG-----------CGUCUACa--GCGaCCUGCGc -5'
6530 3' -55.5 NC_001847.1 + 94160 0.7 0.729012
Target:  5'- --aUCuCGCGGcgGcUGCUGGGCGCGg -3'
miRNA:   3'- agaAGcGCGUCuaCaGCGACCUGCGC- -5'
6530 3' -55.5 NC_001847.1 + 41953 0.7 0.732974
Target:  5'- ---aCGCuGCAGAUGUCGCUcguugagugcguucgGGGCGUc -3'
miRNA:   3'- agaaGCG-CGUCUACAGCGA---------------CCUGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.