miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6530 3' -55.5 NC_001847.1 + 2229 0.7 0.73889
Target:  5'- ----aGCGCcGcgG-CGCUGGGCGCGg -3'
miRNA:   3'- agaagCGCGuCuaCaGCGACCUGCGC- -5'
6530 3' -55.5 NC_001847.1 + 3904 0.67 0.877935
Target:  5'- --gUUGCGCGcGGUGgCGC-GGACGCa -3'
miRNA:   3'- agaAGCGCGU-CUACaGCGaCCUGCGc -5'
6530 3' -55.5 NC_001847.1 + 7166 0.69 0.762194
Target:  5'- --aUCGCGCAGccGUCGgUGGcguacaggauuuggaGCGCGu -3'
miRNA:   3'- agaAGCGCGUCuaCAGCgACC---------------UGCGC- -5'
6530 3' -55.5 NC_001847.1 + 7729 0.66 0.89851
Target:  5'- ----gGCGCAGGg--CGC-GGGCGCGg -3'
miRNA:   3'- agaagCGCGUCUacaGCGaCCUGCGC- -5'
6530 3' -55.5 NC_001847.1 + 12031 0.68 0.830937
Target:  5'- cUCUgccCG-GCGGAg--CGCUGGACGCc -3'
miRNA:   3'- -AGAa--GCgCGUCUacaGCGACCUGCGc -5'
6530 3' -55.5 NC_001847.1 + 12761 1.09 0.003138
Target:  5'- uUCUUCGCGCAGAUGUCGCUGGACGCGc -3'
miRNA:   3'- -AGAAGCGCGUCUACAGCGACCUGCGC- -5'
6530 3' -55.5 NC_001847.1 + 14566 0.66 0.904903
Target:  5'- ----aGCGCGGGUGcUgGC-GGGCGCGc -3'
miRNA:   3'- agaagCGCGUCUAC-AgCGaCCUGCGC- -5'
6530 3' -55.5 NC_001847.1 + 20771 0.67 0.855359
Target:  5'- gUCggCGCGCAGAUG-CGagggGGGCuGCa -3'
miRNA:   3'- -AGaaGCGCGUCUACaGCga--CCUG-CGc -5'
6530 3' -55.5 NC_001847.1 + 22129 0.68 0.813726
Target:  5'- ---aCGCGCGGcgGcgUGCUGGAgCGCa -3'
miRNA:   3'- agaaGCGCGUCuaCa-GCGACCU-GCGc -5'
6530 3' -55.5 NC_001847.1 + 24167 0.69 0.771713
Target:  5'- aCggCGCGCAGccguacucgcacagcGUGgCGCUGGugGCc -3'
miRNA:   3'- aGaaGCGCGUC---------------UACaGCGACCugCGc -5'
6530 3' -55.5 NC_001847.1 + 27957 0.66 0.904903
Target:  5'- gCgcgCGCGCucGcgGUCGCggUGGAgGCGg -3'
miRNA:   3'- aGaa-GCGCGu-CuaCAGCG--ACCUgCGC- -5'
6530 3' -55.5 NC_001847.1 + 28876 0.67 0.847414
Target:  5'- ---cCGCGCAGAacgCGCugUGGGCGCu -3'
miRNA:   3'- agaaGCGCGUCUacaGCG--ACCUGCGc -5'
6530 3' -55.5 NC_001847.1 + 29684 0.66 0.916974
Target:  5'- --gUgGCGCAGcUGauggcgcugaUCGCuUGGGCGCGa -3'
miRNA:   3'- agaAgCGCGUCuAC----------AGCG-ACCUGCGC- -5'
6530 3' -55.5 NC_001847.1 + 29984 0.71 0.675462
Target:  5'- cCUUCGCGCGGcugcagggcuAUGUCGCcgagacggaagcgcUGGcCGCGu -3'
miRNA:   3'- aGAAGCGCGUC----------UACAGCG--------------ACCuGCGC- -5'
6530 3' -55.5 NC_001847.1 + 30532 0.67 0.847414
Target:  5'- cUCggCGCGCAGGgcgUGCUGcugcucucGACGCGg -3'
miRNA:   3'- -AGaaGCGCGUCUacaGCGAC--------CUGCGC- -5'
6530 3' -55.5 NC_001847.1 + 31157 0.66 0.901096
Target:  5'- cCUUCGCggGCGGcgucgacgccgCGCUGGGCGCc -3'
miRNA:   3'- aGAAGCG--CGUCuaca-------GCGACCUGCGc -5'
6530 3' -55.5 NC_001847.1 + 31423 0.69 0.748674
Target:  5'- gUCUggcagcCGCgGCGGAcGUCGCUGG-CGCu -3'
miRNA:   3'- -AGAa-----GCG-CGUCUaCAGCGACCuGCGc -5'
6530 3' -55.5 NC_001847.1 + 31894 0.68 0.839272
Target:  5'- --gUCGCGCGGAUGcCGCcgcagaucacGGcCGCGg -3'
miRNA:   3'- agaAGCGCGUCUACaGCGa---------CCuGCGC- -5'
6530 3' -55.5 NC_001847.1 + 32771 0.79 0.281377
Target:  5'- gCUUCGCGaCGGccgGcCGCUGGACGCGc -3'
miRNA:   3'- aGAAGCGC-GUCua-CaGCGACCUGCGC- -5'
6530 3' -55.5 NC_001847.1 + 33014 0.68 0.834293
Target:  5'- --gUCGCGCGGAgugccgCcgcccucuccgccgaGCUGGACGCGc -3'
miRNA:   3'- agaAGCGCGUCUaca---G---------------CGACCUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.