miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6530 3' -55.5 NC_001847.1 + 53810 0.69 0.76792
Target:  5'- ---aCGUGCAaggcGUGUCGC-GGGCGCGg -3'
miRNA:   3'- agaaGCGCGUc---UACAGCGaCCUGCGC- -5'
6530 3' -55.5 NC_001847.1 + 66318 0.7 0.719049
Target:  5'- cUCUUCGCggcgcccugcgGCGGGUGgggCGC-GGGCGCc -3'
miRNA:   3'- -AGAAGCG-----------CGUCUACa--GCGaCCUGCGc -5'
6530 3' -55.5 NC_001847.1 + 94160 0.7 0.729012
Target:  5'- --aUCuCGCGGcgGcUGCUGGGCGCGg -3'
miRNA:   3'- agaAGcGCGUCuaCaGCGACCUGCGC- -5'
6530 3' -55.5 NC_001847.1 + 72312 0.7 0.73889
Target:  5'- ---aCGCGCGcGUGgCGgUGGACGCGg -3'
miRNA:   3'- agaaGCGCGUcUACaGCgACCUGCGC- -5'
6530 3' -55.5 NC_001847.1 + 105042 0.7 0.73889
Target:  5'- ----aGCGCcGcgG-CGCUGGGCGCGg -3'
miRNA:   3'- agaagCGCGuCuaCaGCGACCUGCGC- -5'
6530 3' -55.5 NC_001847.1 + 74347 0.69 0.748674
Target:  5'- gCgcgCGCGCuGGUGgcgCGCgUGGugGCGc -3'
miRNA:   3'- aGaa-GCGCGuCUACa--GCG-ACCugCGC- -5'
6530 3' -55.5 NC_001847.1 + 79193 0.69 0.748674
Target:  5'- --gUCGCGCGGGUG-CGCauucUGGGCucGCGa -3'
miRNA:   3'- agaAGCGCGUCUACaGCG----ACCUG--CGC- -5'
6530 3' -55.5 NC_001847.1 + 31423 0.69 0.748674
Target:  5'- gUCUggcagcCGCgGCGGAcGUCGCUGG-CGCu -3'
miRNA:   3'- -AGAa-----GCG-CGUCUaCAGCGACCuGCGc -5'
6530 3' -55.5 NC_001847.1 + 7166 0.69 0.762194
Target:  5'- --aUCGCGCAGccGUCGgUGGcguacaggauuuggaGCGCGu -3'
miRNA:   3'- agaAGCGCGUCuaCAGCgACC---------------UGCGC- -5'
6530 3' -55.5 NC_001847.1 + 90360 0.7 0.70901
Target:  5'- cUUUCGgGCGGcgaccUGCUGGACGCGg -3'
miRNA:   3'- aGAAGCgCGUCuaca-GCGACCUGCGC- -5'
6530 3' -55.5 NC_001847.1 + 29984 0.71 0.675462
Target:  5'- cCUUCGCGCGGcugcagggcuAUGUCGCcgagacggaagcgcUGGcCGCGu -3'
miRNA:   3'- aGAAGCGCGUC----------UACAGCG--------------ACCuGCGC- -5'
6530 3' -55.5 NC_001847.1 + 91377 0.71 0.658006
Target:  5'- cUCUaCGCGCAGGUG-CGUaaUGGACGa- -3'
miRNA:   3'- -AGAaGCGCGUCUACaGCG--ACCUGCgc -5'
6530 3' -55.5 NC_001847.1 + 32771 0.79 0.281377
Target:  5'- gCUUCGCGaCGGccgGcCGCUGGACGCGc -3'
miRNA:   3'- aGAAGCGC-GUCua-CaGCGACCUGCGC- -5'
6530 3' -55.5 NC_001847.1 + 33442 0.78 0.309018
Target:  5'- cUCggCGuCGCGGgcGUCGCUGGAgGCGa -3'
miRNA:   3'- -AGaaGC-GCGUCuaCAGCGACCUgCGC- -5'
6530 3' -55.5 NC_001847.1 + 37465 0.75 0.430471
Target:  5'- --cUCGCGguGGacUCGCUGGGCGCa -3'
miRNA:   3'- agaAGCGCguCUacAGCGACCUGCGc -5'
6530 3' -55.5 NC_001847.1 + 77795 0.74 0.476742
Target:  5'- ----aGCGCGGAUGUCuGgaGGACGUGg -3'
miRNA:   3'- agaagCGCGUCUACAG-CgaCCUGCGC- -5'
6530 3' -55.5 NC_001847.1 + 66181 0.74 0.505658
Target:  5'- ---cCGCGCGGGccgCGCUGGACGCc -3'
miRNA:   3'- agaaGCGCGUCUacaGCGACCUGCGc -5'
6530 3' -55.5 NC_001847.1 + 78525 0.73 0.56553
Target:  5'- --cUCGCGCGGcugGUGUCGCcGGAagaCGCGa -3'
miRNA:   3'- agaAGCGCGUC---UACAGCGaCCU---GCGC- -5'
6530 3' -55.5 NC_001847.1 + 38019 0.72 0.616766
Target:  5'- --cUCGCGCGGGUGcUG-UGGGCGCGc -3'
miRNA:   3'- agaAGCGCGUCUACaGCgACCUGCGC- -5'
6530 3' -55.5 NC_001847.1 + 33739 0.72 0.627078
Target:  5'- ---aCGCGCAGAgcUGUaccagCGcCUGGACGCGc -3'
miRNA:   3'- agaaGCGCGUCU--ACA-----GC-GACCUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.