miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6535 3' -53.9 NC_001847.1 + 24926 0.66 0.927534
Target:  5'- gCACgGCCcgcacgucGCAGUGCCagGCUCGAgGUa -3'
miRNA:   3'- -GUGgUGGa-------CGUCAUGGa-CGAGUUgUA- -5'
6535 3' -53.9 NC_001847.1 + 74578 0.66 0.927534
Target:  5'- aACCugCUgacGCAGgGCCUGCagGACGg -3'
miRNA:   3'- gUGGugGA---CGUCaUGGACGagUUGUa -5'
6535 3' -53.9 NC_001847.1 + 117791 0.66 0.927534
Target:  5'- aUACC-CCUGCGGgcuggACCgaggGCUCggUGUg -3'
miRNA:   3'- -GUGGuGGACGUCa----UGGa---CGAGuuGUA- -5'
6535 3' -53.9 NC_001847.1 + 99603 0.66 0.927534
Target:  5'- gCGCCGCCUcgGCAGccacgACCUcgccgaggaugcGCUCGGCGc -3'
miRNA:   3'- -GUGGUGGA--CGUCa----UGGA------------CGAGUUGUa -5'
6535 3' -53.9 NC_001847.1 + 60803 0.66 0.921874
Target:  5'- gCGCCACCaGCGcgcGcGCCUGCggCAGCGg -3'
miRNA:   3'- -GUGGUGGaCGU---CaUGGACGa-GUUGUa -5'
6535 3' -53.9 NC_001847.1 + 55985 0.66 0.921294
Target:  5'- gCGCUGCCUuucgaaaGCcgAGUACCUGCgCAGCGg -3'
miRNA:   3'- -GUGGUGGA-------CG--UCAUGGACGaGUUGUa -5'
6535 3' -53.9 NC_001847.1 + 73819 0.66 0.920711
Target:  5'- uCGCCGCgCUGCAGcggcugcgcguCCUGC-CGGCAUu -3'
miRNA:   3'- -GUGGUG-GACGUCau---------GGACGaGUUGUA- -5'
6535 3' -53.9 NC_001847.1 + 131452 0.66 0.915953
Target:  5'- gCGCCuACCUGUGGUGCgCgcagGCUCGcgGCGg -3'
miRNA:   3'- -GUGG-UGGACGUCAUG-Ga---CGAGU--UGUa -5'
6535 3' -53.9 NC_001847.1 + 39242 0.66 0.915953
Target:  5'- cCACCACCgucagGCGGUGCgCUugGCUCGc--- -3'
miRNA:   3'- -GUGGUGGa----CGUCAUG-GA--CGAGUugua -5'
6535 3' -53.9 NC_001847.1 + 133666 0.66 0.909772
Target:  5'- gCGCCGCCgcUGCGGcucUGCCgcgGCggCAACGUg -3'
miRNA:   3'- -GUGGUGG--ACGUC---AUGGa--CGa-GUUGUA- -5'
6535 3' -53.9 NC_001847.1 + 4317 0.66 0.909772
Target:  5'- gCGCCGCCUGCGGguagUGCUCcGCc- -3'
miRNA:   3'- -GUGGUGGACGUCauggACGAGuUGua -5'
6535 3' -53.9 NC_001847.1 + 30853 0.66 0.909772
Target:  5'- gCGCCGCCgcUGCGGcucUGCCgcgGCggCAACGUg -3'
miRNA:   3'- -GUGGUGG--ACGUC---AUGGa--CGa-GUUGUA- -5'
6535 3' -53.9 NC_001847.1 + 77476 0.66 0.909772
Target:  5'- gCACCACCgUGCccaccGCCUGCcCGACGg -3'
miRNA:   3'- -GUGGUGG-ACGuca--UGGACGaGUUGUa -5'
6535 3' -53.9 NC_001847.1 + 114686 0.67 0.89664
Target:  5'- aGCCGCC-GCG--GCCUGCUgGACGc -3'
miRNA:   3'- gUGGUGGaCGUcaUGGACGAgUUGUa -5'
6535 3' -53.9 NC_001847.1 + 84089 0.67 0.89664
Target:  5'- --aCGCCU-CGGUgGCCUGCUCGACc- -3'
miRNA:   3'- gugGUGGAcGUCA-UGGACGAGUUGua -5'
6535 3' -53.9 NC_001847.1 + 70888 0.67 0.889694
Target:  5'- aACCGCCUGCGG-ACC-GCUacucgCGGCAc -3'
miRNA:   3'- gUGGUGGACGUCaUGGaCGA-----GUUGUa -5'
6535 3' -53.9 NC_001847.1 + 16131 0.67 0.875065
Target:  5'- -cCCACCUGCGGgu-CUGCgaUCAGCGc -3'
miRNA:   3'- guGGUGGACGUCaugGACG--AGUUGUa -5'
6535 3' -53.9 NC_001847.1 + 34151 0.67 0.874308
Target:  5'- uGCCGCCgcgGCGGcACCUuccgucgcucggaGCUCGGCGc -3'
miRNA:   3'- gUGGUGGa--CGUCaUGGA-------------CGAGUUGUa -5'
6535 3' -53.9 NC_001847.1 + 12978 0.67 0.867392
Target:  5'- gGCCAUggcgCUGCAGUACCgGCUgGGgGUg -3'
miRNA:   3'- gUGGUG----GACGUCAUGGaCGAgUUgUA- -5'
6535 3' -53.9 NC_001847.1 + 71401 0.67 0.867392
Target:  5'- gCGCCGCCagGCGGcGCUguUGCUCGGCc- -3'
miRNA:   3'- -GUGGUGGa-CGUCaUGG--ACGAGUUGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.