miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6566 3' -54.7 NC_001847.1 + 31528 0.66 0.928531
Target:  5'- aGCGGGGAcGUGCCCCaGGcguuuGucGCGCg -3'
miRNA:   3'- gCGCUCUU-CAUGGGGaCCuu---Cu-CGUG- -5'
6566 3' -54.7 NC_001847.1 + 4325 0.66 0.928531
Target:  5'- uGCGGGuAGUGCUCCgccauguAGGGCGCc -3'
miRNA:   3'- gCGCUCuUCAUGGGGaccu---UCUCGUG- -5'
6566 3' -54.7 NC_001847.1 + 97304 0.66 0.92305
Target:  5'- cCGCGGGGcgcGUGCCuCCguccGAGGAGCGa -3'
miRNA:   3'- -GCGCUCUu--CAUGG-GGac--CUUCUCGUg -5'
6566 3' -54.7 NC_001847.1 + 40383 0.66 0.92305
Target:  5'- aGCGGGggGcgacgGCCCC-GGccAAGAcGCGCc -3'
miRNA:   3'- gCGCUCuuCa----UGGGGaCC--UUCU-CGUG- -5'
6566 3' -54.7 NC_001847.1 + 60874 0.66 0.92305
Target:  5'- gCGCGGGgcGgccGCgCCCgGGAAGAGUu- -3'
miRNA:   3'- -GCGCUCuuCa--UG-GGGaCCUUCUCGug -5'
6566 3' -54.7 NC_001847.1 + 35327 0.66 0.92305
Target:  5'- aGCGGGc-GUGCgCCUGGAGcugccGAGCGa -3'
miRNA:   3'- gCGCUCuuCAUGgGGACCUU-----CUCGUg -5'
6566 3' -54.7 NC_001847.1 + 49993 0.66 0.919642
Target:  5'- cCGCGAGAGGaGCCCgCgcgcccaccgccugcUGGGccccGGGCGCg -3'
miRNA:   3'- -GCGCUCUUCaUGGG-G---------------ACCUu---CUCGUG- -5'
6566 3' -54.7 NC_001847.1 + 9050 0.66 0.91732
Target:  5'- gCGCGAGggG-GCaa-UGGAcuuuuGGAGCGCa -3'
miRNA:   3'- -GCGCUCuuCaUGgggACCU-----UCUCGUG- -5'
6566 3' -54.7 NC_001847.1 + 18794 0.66 0.9095
Target:  5'- aCGCacaccagcuCCCCgUGGAAGAGCACg -3'
miRNA:   3'- -GCGcucuucau-GGGG-ACCUUCUCGUG- -5'
6566 3' -54.7 NC_001847.1 + 80992 0.66 0.905116
Target:  5'- aCGCG-GAGGacgcGCUgCUGGAccaggaGGAGCGCa -3'
miRNA:   3'- -GCGCuCUUCa---UGGgGACCU------UCUCGUG- -5'
6566 3' -54.7 NC_001847.1 + 98579 0.66 0.903201
Target:  5'- aCGCGGGAAGUccauuggggcgccgGCgCUUGGgcG-GCGCg -3'
miRNA:   3'- -GCGCUCUUCA--------------UGgGGACCuuCuCGUG- -5'
6566 3' -54.7 NC_001847.1 + 52042 0.67 0.898647
Target:  5'- aCGCGAGgcGgagGCCCgCccggaggugUGGgcGGGCACc -3'
miRNA:   3'- -GCGCUCuuCa--UGGG-G---------ACCuuCUCGUG- -5'
6566 3' -54.7 NC_001847.1 + 38584 0.67 0.898647
Target:  5'- cCGCG-GAG--GCUCCUGGcguuGAGCGCg -3'
miRNA:   3'- -GCGCuCUUcaUGGGGACCuu--CUCGUG- -5'
6566 3' -54.7 NC_001847.1 + 26126 0.67 0.891936
Target:  5'- aGCGGGGAGU-CCCaaugGGGAGGGgGu -3'
miRNA:   3'- gCGCUCUUCAuGGGga--CCUUCUCgUg -5'
6566 3' -54.7 NC_001847.1 + 128939 0.67 0.891936
Target:  5'- aGCGGGGAGU-CCCaaugGGGAGGGgGu -3'
miRNA:   3'- gCGCUCUUCAuGGGga--CCUUCUCgUg -5'
6566 3' -54.7 NC_001847.1 + 68257 0.67 0.891936
Target:  5'- aGCGcGAAGcACUCCcGGuuGGGCGCg -3'
miRNA:   3'- gCGCuCUUCaUGGGGaCCuuCUCGUG- -5'
6566 3' -54.7 NC_001847.1 + 40121 0.67 0.891936
Target:  5'- gCGCGccacGAcgAGU-CCCUUGGccGAGCACa -3'
miRNA:   3'- -GCGCu---CU--UCAuGGGGACCuuCUCGUG- -5'
6566 3' -54.7 NC_001847.1 + 26220 0.67 0.891936
Target:  5'- aGCGGGGAGU-CCCaaugGGGAGGGgGu -3'
miRNA:   3'- gCGCUCUUCAuGGGga--CCUUCUCgUg -5'
6566 3' -54.7 NC_001847.1 + 129033 0.67 0.891936
Target:  5'- aGCGGGGAGU-CCCaaugGGGAGGGgGu -3'
miRNA:   3'- gCGCUCUUCAuGGGga--CCUUCUCgUg -5'
6566 3' -54.7 NC_001847.1 + 117993 0.67 0.891936
Target:  5'- gGUGAGGucgaAGUGCUCgaGGAcgaagccgGGAGCGCc -3'
miRNA:   3'- gCGCUCU----UCAUGGGgaCCU--------UCUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.