miRNA display CGI


Results 1 - 20 of 559 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6574 3' -62.3 NC_001847.1 + 77065 0.66 0.602481
Target:  5'- ----cGGcaccCGCUGCGGCGCGcGCGCg -3'
miRNA:   3'- auggaCCuc--GCGACGCUGCGCcCGCG- -5'
6574 3' -62.3 NC_001847.1 + 107697 0.66 0.582681
Target:  5'- cGCCUGcGGUugGCgGCGcuCGCGGGCGg -3'
miRNA:   3'- aUGGACcUCG--CGaCGCu-GCGCCCGCg -5'
6574 3' -62.3 NC_001847.1 + 86726 0.66 0.582681
Target:  5'- gUACCc-GAGCGCcgGCGACGCGuccCGCu -3'
miRNA:   3'- -AUGGacCUCGCGa-CGCUGCGCcc-GCG- -5'
6574 3' -62.3 NC_001847.1 + 46888 0.66 0.582681
Target:  5'- cGCgUGcGAGCGCcgcuucaGCGAgGCuucgggGGGCGCg -3'
miRNA:   3'- aUGgAC-CUCGCGa------CGCUgCG------CCCGCG- -5'
6574 3' -62.3 NC_001847.1 + 37125 0.66 0.582681
Target:  5'- aUGCuCUGGGGCGCgcacGCccaGCGGGCc- -3'
miRNA:   3'- -AUG-GACCUCGCGa---CGcugCGCCCGcg -5'
6574 3' -62.3 NC_001847.1 + 10567 0.66 0.582681
Target:  5'- cGCCgGGcccGGCGCcgGCGgcccccccgcgcGCGCGGGCcgGCg -3'
miRNA:   3'- aUGGaCC---UCGCGa-CGC------------UGCGCCCG--CG- -5'
6574 3' -62.3 NC_001847.1 + 82511 0.66 0.582681
Target:  5'- -gUCUGGcgcGGCGCUcGCGcACGCGccgaagucaaaGGCGCc -3'
miRNA:   3'- auGGACC---UCGCGA-CGC-UGCGC-----------CCGCG- -5'
6574 3' -62.3 NC_001847.1 + 40885 0.66 0.578736
Target:  5'- aGCCgUGGAcgcaggGCGCgagccgcuccacgGCccGCGCGGGCGCc -3'
miRNA:   3'- aUGG-ACCU------CGCGa------------CGc-UGCGCCCGCG- -5'
6574 3' -62.3 NC_001847.1 + 2088 0.66 0.572829
Target:  5'- cGCCccgcGGGGCccGC-GCGGCgGCGGGcCGCg -3'
miRNA:   3'- aUGGa---CCUCG--CGaCGCUG-CGCCC-GCG- -5'
6574 3' -62.3 NC_001847.1 + 116105 0.66 0.591577
Target:  5'- gACCUGcGGGCuGCUucucggccuuucgGCcgGGCGCugGGGCGCg -3'
miRNA:   3'- aUGGAC-CUCG-CGA-------------CG--CUGCG--CCCGCG- -5'
6574 3' -62.3 NC_001847.1 + 14920 0.66 0.592567
Target:  5'- cUGCCUcGccGCgauacacaagGCUGCGA-GCGGGCGCc -3'
miRNA:   3'- -AUGGA-CcuCG----------CGACGCUgCGCCCGCG- -5'
6574 3' -62.3 NC_001847.1 + 21775 0.66 0.592567
Target:  5'- cGCCgGGcccGGCGC--CGGC-CGGGCGCg -3'
miRNA:   3'- aUGGaCC---UCGCGacGCUGcGCCCGCG- -5'
6574 3' -62.3 NC_001847.1 + 88351 0.66 0.602481
Target:  5'- gACggGGGGaacgaGggGCG-CGCGGGCGCg -3'
miRNA:   3'- aUGgaCCUCg----CgaCGCuGCGCCCGCG- -5'
6574 3' -62.3 NC_001847.1 + 110205 0.66 0.602481
Target:  5'- gUACCUcGAGCccuggcaCUGCGACguGCGGGcCGUg -3'
miRNA:   3'- -AUGGAcCUCGc------GACGCUG--CGCCC-GCG- -5'
6574 3' -62.3 NC_001847.1 + 59564 0.66 0.602481
Target:  5'- gGCCUGGAGCacuuuuuuUUGcCGGCGCucacGGGCaGCu -3'
miRNA:   3'- aUGGACCUCGc-------GAC-GCUGCG----CCCG-CG- -5'
6574 3' -62.3 NC_001847.1 + 57989 0.66 0.601488
Target:  5'- gACCggcgcggUGGcGGCGCagGCGGCGgCGGucGCGCg -3'
miRNA:   3'- aUGG-------ACC-UCGCGa-CGCUGC-GCC--CGCG- -5'
6574 3' -62.3 NC_001847.1 + 93398 0.66 0.592567
Target:  5'- -cCCUGGAGUacaucUUGCGGCuaauggccaGCuGGGCGCa -3'
miRNA:   3'- auGGACCUCGc----GACGCUG---------CG-CCCGCG- -5'
6574 3' -62.3 NC_001847.1 + 22395 0.66 0.592567
Target:  5'- cGCCcGGGcCGCgGCGAgcgugcucgucCGCGGGgGCg -3'
miRNA:   3'- aUGGaCCUcGCGaCGCU-----------GCGCCCgCG- -5'
6574 3' -62.3 NC_001847.1 + 1902 0.66 0.592567
Target:  5'- cGCC-GcGAGCGCgUGCGAgagccCGCcGcGGCGCg -3'
miRNA:   3'- aUGGaC-CUCGCG-ACGCU-----GCG-C-CCGCG- -5'
6574 3' -62.3 NC_001847.1 + 22610 0.66 0.592567
Target:  5'- cGCgUGGcaAGCGagugGCcGCGCaGGGCGCg -3'
miRNA:   3'- aUGgACC--UCGCga--CGcUGCG-CCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.