miRNA display CGI


Results 1 - 20 of 559 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6574 3' -62.3 NC_001847.1 + 275 0.69 0.382338
Target:  5'- aGCCcgGGGGcCGCcgaGCccGCGCGGGCGCc -3'
miRNA:   3'- aUGGa-CCUC-GCGa--CGc-UGCGCCCGCG- -5'
6574 3' -62.3 NC_001847.1 + 1091 0.72 0.268367
Target:  5'- cGCC-GG-GCGCcGCGGcCGCGGGCGg -3'
miRNA:   3'- aUGGaCCuCGCGaCGCU-GCGCCCGCg -5'
6574 3' -62.3 NC_001847.1 + 1100 0.7 0.351036
Target:  5'- gACuCUGGAGaCGCcgcgugccccUGCGACGCuGGCGa -3'
miRNA:   3'- aUG-GACCUC-GCG----------ACGCUGCGcCCGCg -5'
6574 3' -62.3 NC_001847.1 + 1146 0.67 0.543533
Target:  5'- cGCCUcGGcGCGCggcuccgGCaGCGCGGccGCGCa -3'
miRNA:   3'- aUGGA-CCuCGCGa------CGcUGCGCC--CGCG- -5'
6574 3' -62.3 NC_001847.1 + 1902 0.66 0.592567
Target:  5'- cGCC-GcGAGCGCgUGCGAgagccCGCcGcGGCGCg -3'
miRNA:   3'- aUGGaC-CUCGCG-ACGCU-----GCG-C-CCGCG- -5'
6574 3' -62.3 NC_001847.1 + 2088 0.66 0.572829
Target:  5'- cGCCccgcGGGGCccGC-GCGGCgGCGGGcCGCg -3'
miRNA:   3'- aUGGa---CCUCG--CGaCGCUG-CGCCC-GCG- -5'
6574 3' -62.3 NC_001847.1 + 2132 0.7 0.366457
Target:  5'- cGCCUcGGGGuCGaagGCGAgCGcCGGGCGCc -3'
miRNA:   3'- aUGGA-CCUC-GCga-CGCU-GC-GCCCGCG- -5'
6574 3' -62.3 NC_001847.1 + 2187 0.73 0.222478
Target:  5'- cGCCUGG-GCG--GCG-UGCGGGCGCa -3'
miRNA:   3'- aUGGACCuCGCgaCGCuGCGCCCGCG- -5'
6574 3' -62.3 NC_001847.1 + 2222 0.77 0.136237
Target:  5'- gGCCgccAGCGCcGCGGCGCuGGGCGCg -3'
miRNA:   3'- aUGGaccUCGCGaCGCUGCG-CCCGCG- -5'
6574 3' -62.3 NC_001847.1 + 2537 0.71 0.31035
Target:  5'- gGCCgcgGGAccgcugcucuccggcGgGCUGUcuucGGCGCGGGCGCc -3'
miRNA:   3'- aUGGa--CCU---------------CgCGACG----CUGCGCCCGCG- -5'
6574 3' -62.3 NC_001847.1 + 2733 0.69 0.407003
Target:  5'- cACCacGGAGCGCaggGCGggaGCGagcgaGGGCGCc -3'
miRNA:   3'- aUGGa-CCUCGCGa--CGC---UGCg----CCCGCG- -5'
6574 3' -62.3 NC_001847.1 + 2745 0.71 0.314533
Target:  5'- gGCCcccGGcccGGCGCgGCGGCGCcGGCGCc -3'
miRNA:   3'- aUGGa--CC---UCGCGaCGCUGCGcCCGCG- -5'
6574 3' -62.3 NC_001847.1 + 2841 0.72 0.274612
Target:  5'- gAUCUcGGGGUccgccaugccGCUGCGAcuCGCGGGCGUc -3'
miRNA:   3'- aUGGA-CCUCG----------CGACGCU--GCGCCCGCG- -5'
6574 3' -62.3 NC_001847.1 + 2948 0.66 0.572829
Target:  5'- cGCCUccAGCGCgGCGGcCGCcucGGCGCg -3'
miRNA:   3'- aUGGAccUCGCGaCGCU-GCGc--CCGCG- -5'
6574 3' -62.3 NC_001847.1 + 2994 0.7 0.364894
Target:  5'- gGCgCUGGAGcCGCgcgcgcuccaccGCGuCGCGGGcCGCg -3'
miRNA:   3'- aUG-GACCUC-GCGa-----------CGCuGCGCCC-GCG- -5'
6574 3' -62.3 NC_001847.1 + 3143 0.72 0.262237
Target:  5'- aGCCcGGcGGCGCcgGCGGCGCGGcGgGCc -3'
miRNA:   3'- aUGGaCC-UCGCGa-CGCUGCGCC-CgCG- -5'
6574 3' -62.3 NC_001847.1 + 3282 0.73 0.252667
Target:  5'- gGCCgGcGAGCacggcgcgcagcucgGCgagcGCGGCGCGGGCGCc -3'
miRNA:   3'- aUGGaC-CUCG---------------CGa---CGCUGCGCCCGCG- -5'
6574 3' -62.3 NC_001847.1 + 3544 0.67 0.505285
Target:  5'- gGCC-GcGAGCGCggcgGCGGCGUaguugaGGGUGUa -3'
miRNA:   3'- aUGGaC-CUCGCGa---CGCUGCG------CCCGCG- -5'
6574 3' -62.3 NC_001847.1 + 3884 0.69 0.388003
Target:  5'- gGCCcGucGCGCgGCGccgcggcguagccaGCGCGGGCGCc -3'
miRNA:   3'- aUGGaCcuCGCGaCGC--------------UGCGCCCGCG- -5'
6574 3' -62.3 NC_001847.1 + 3900 0.67 0.543533
Target:  5'- aGCCguu-GCGCgcgGUGGCGCGGaCGCa -3'
miRNA:   3'- aUGGaccuCGCGa--CGCUGCGCCcGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.