miRNA display CGI


Results 1 - 20 of 559 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6574 3' -62.3 NC_001847.1 + 50592 1.08 0.000747
Target:  5'- cUACCUGGAGCGCUGCGACGCGGGCGCc -3'
miRNA:   3'- -AUGGACCUCGCGACGCUGCGCCCGCG- -5'
6574 3' -62.3 NC_001847.1 + 115676 0.76 0.149458
Target:  5'- cACCcaUGGAGCGCgcgGCGgagcggcuggcccgGCaGCGGGCGCg -3'
miRNA:   3'- aUGG--ACCUCGCGa--CGC--------------UG-CGCCCGCG- -5'
6574 3' -62.3 NC_001847.1 + 33343 0.76 0.15058
Target:  5'- gGCCUGGguGGCGCUGCuGCaCGaGGCGCa -3'
miRNA:   3'- aUGGACC--UCGCGACGcUGcGC-CCGCG- -5'
6574 3' -62.3 NC_001847.1 + 77065 0.66 0.602481
Target:  5'- ----cGGcaccCGCUGCGGCGCGcGCGCg -3'
miRNA:   3'- auggaCCuc--GCGACGCUGCGCcCGCG- -5'
6574 3' -62.3 NC_001847.1 + 15742 0.81 0.066341
Target:  5'- aACCUGGAGgGCgccuaUGcCGACGCGGGCGg -3'
miRNA:   3'- aUGGACCUCgCG-----AC-GCUGCGCCCGCg -5'
6574 3' -62.3 NC_001847.1 + 36093 0.81 0.071746
Target:  5'- gGCUggcGGAGCGCgGCGACGCgcuGGGCGCc -3'
miRNA:   3'- aUGGa--CCUCGCGaCGCUGCG---CCCGCG- -5'
6574 3' -62.3 NC_001847.1 + 21171 0.79 0.095403
Target:  5'- -uCCUGGAGCGCUucugcgGCGACGCGcccggcGGCGUa -3'
miRNA:   3'- auGGACCUCGCGA------CGCUGCGC------CCGCG- -5'
6574 3' -62.3 NC_001847.1 + 7705 0.79 0.09814
Target:  5'- --gCUGGAGCGCgccuugggcauucagGCGcaggGCGCGGGCGCg -3'
miRNA:   3'- augGACCUCGCGa--------------CGC----UGCGCCCGCG- -5'
6574 3' -62.3 NC_001847.1 + 53260 0.78 0.114126
Target:  5'- cGCCUcggcGGGGCGCUGCG-CGCccaGGCGCg -3'
miRNA:   3'- aUGGA----CCUCGCGACGCuGCGc--CCGCG- -5'
6574 3' -62.3 NC_001847.1 + 29707 0.76 0.14687
Target:  5'- cGCUUGG-GCGCgagacUGCGGCGCGGGaGCg -3'
miRNA:   3'- aUGGACCuCGCG-----ACGCUGCGCCCgCG- -5'
6574 3' -62.3 NC_001847.1 + 5859 0.77 0.130859
Target:  5'- cGCCUGGcccucgaggugguccAGCGCUGCG-CGCaGGGCGg -3'
miRNA:   3'- aUGGACC---------------UCGCGACGCuGCG-CCCGCg -5'
6574 3' -62.3 NC_001847.1 + 124908 0.78 0.111255
Target:  5'- gGCCcGGcaGGCGCgccggggGCGACaGCGGGCGCg -3'
miRNA:   3'- aUGGaCC--UCGCGa------CGCUG-CGCCCGCG- -5'
6574 3' -62.3 NC_001847.1 + 33817 0.85 0.033392
Target:  5'- cGCgCUGGAGCgGCUGUgcgcaGACGCGGGCGCg -3'
miRNA:   3'- aUG-GACCUCG-CGACG-----CUGCGCCCGCG- -5'
6574 3' -62.3 NC_001847.1 + 87686 0.77 0.132852
Target:  5'- gGCgCUGGGGCuGCUGCGGCGCcGcGGCGg -3'
miRNA:   3'- aUG-GACCUCG-CGACGCUGCG-C-CCGCg -5'
6574 3' -62.3 NC_001847.1 + 41159 0.84 0.042404
Target:  5'- cGCgaGuGAGCGC-GCGGCGCGGGCGCg -3'
miRNA:   3'- aUGgaC-CUCGCGaCGCUGCGCCCGCG- -5'
6574 3' -62.3 NC_001847.1 + 36951 0.78 0.111255
Target:  5'- gGCCgagcGGGG-GCUGCGgccaGCGCGGGCGCc -3'
miRNA:   3'- aUGGa---CCUCgCGACGC----UGCGCCCGCG- -5'
6574 3' -62.3 NC_001847.1 + 105035 0.77 0.136237
Target:  5'- gGCCgccAGCGCcGCGGCGCuGGGCGCg -3'
miRNA:   3'- aUGGaccUCGCGaCGCUGCG-CCCGCG- -5'
6574 3' -62.3 NC_001847.1 + 126082 0.76 0.15058
Target:  5'- gGCUgcaaUGGAGCGCUGC-ACGgGGGgGCg -3'
miRNA:   3'- aUGG----ACCUCGCGACGcUGCgCCCgCG- -5'
6574 3' -62.3 NC_001847.1 + 62136 0.83 0.044709
Target:  5'- gGCCUGGuuccgcgcccGCGCUGCGgccagcucccGCGCGGGCGCg -3'
miRNA:   3'- aUGGACCu---------CGCGACGC----------UGCGCCCGCG- -5'
6574 3' -62.3 NC_001847.1 + 86427 0.79 0.088303
Target:  5'- uUugUUGGcGGCGCUGCGcgGCGCGGGCaGCg -3'
miRNA:   3'- -AugGACC-UCGCGACGC--UGCGCCCG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.