miRNA display CGI


Results 1 - 20 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6585 3' -55.7 NC_001847.1 + 56596 1.09 0.002753
Target:  5'- uGAGCGACUGCGUGAUCGAAGAGGCCGa -3'
miRNA:   3'- -CUCGCUGACGCACUAGCUUCUCCGGC- -5'
6585 3' -55.7 NC_001847.1 + 68861 0.75 0.426861
Target:  5'- aGGCGGCgGCGUGcgccgggcCGAAGAGGCCu -3'
miRNA:   3'- cUCGCUGaCGCACua------GCUUCUCCGGc -5'
6585 3' -55.7 NC_001847.1 + 81052 0.75 0.426861
Target:  5'- gGGGCGACguggGCGUGggCGggGccuGGCUGg -3'
miRNA:   3'- -CUCGCUGa---CGCACuaGCuuCu--CCGGC- -5'
6585 3' -55.7 NC_001847.1 + 56370 0.75 0.444998
Target:  5'- cGGGCGGCacgaccucgGCGcucgGGUCGggGAGGUCGg -3'
miRNA:   3'- -CUCGCUGa--------CGCa---CUAGCuuCUCCGGC- -5'
6585 3' -55.7 NC_001847.1 + 42633 0.74 0.451448
Target:  5'- gGGGCGGCaGCGccGAcgucgugcccuuugUCGAAGAGGCCGc -3'
miRNA:   3'- -CUCGCUGaCGCa-CU--------------AGCUUCUCCGGC- -5'
6585 3' -55.7 NC_001847.1 + 37590 0.73 0.521501
Target:  5'- -uGCGGCUGCGg---CGGccGGGGGCCGg -3'
miRNA:   3'- cuCGCUGACGCacuaGCU--UCUCCGGC- -5'
6585 3' -55.7 NC_001847.1 + 99796 0.73 0.54145
Target:  5'- cAGCGcCUGUGgugcggGGUCGGAGcGGCCGg -3'
miRNA:   3'- cUCGCuGACGCa-----CUAGCUUCuCCGGC- -5'
6585 3' -55.7 NC_001847.1 + 102665 0.73 0.54145
Target:  5'- gGAGCGGCcGCGaGggCGggGGGGCgGg -3'
miRNA:   3'- -CUCGCUGaCGCaCuaGCuuCUCCGgC- -5'
6585 3' -55.7 NC_001847.1 + 58515 0.73 0.55152
Target:  5'- aGGGCGACggGCaggGAcaCGAAGAGGCCGc -3'
miRNA:   3'- -CUCGCUGa-CGca-CUa-GCUUCUCCGGC- -5'
6585 3' -55.7 NC_001847.1 + 44424 0.72 0.571824
Target:  5'- cGAGCGGCUGCGU--UCGcgcacGGGGGCgCGg -3'
miRNA:   3'- -CUCGCUGACGCAcuAGCu----UCUCCG-GC- -5'
6585 3' -55.7 NC_001847.1 + 58564 0.72 0.5923
Target:  5'- cAGCGGCgGCGaaGAUCGggGgccGGGCCGc -3'
miRNA:   3'- cUCGCUGaCGCa-CUAGCuuC---UCCGGC- -5'
6585 3' -55.7 NC_001847.1 + 53939 0.71 0.633549
Target:  5'- cGGCGGCUcUGUGcgCGAGGcGGCCGc -3'
miRNA:   3'- cUCGCUGAcGCACuaGCUUCuCCGGC- -5'
6585 3' -55.7 NC_001847.1 + 43580 0.71 0.643878
Target:  5'- cGGGCGACgcgcgccccaGCGUGG-CGcuGGGGCCGg -3'
miRNA:   3'- -CUCGCUGa---------CGCACUaGCuuCUCCGGC- -5'
6585 3' -55.7 NC_001847.1 + 115682 0.71 0.654198
Target:  5'- uGAGCGGCUGCGcGGg-GgcGAGaGCCGg -3'
miRNA:   3'- -CUCGCUGACGCaCUagCuuCUC-CGGC- -5'
6585 3' -55.7 NC_001847.1 + 51598 0.71 0.654198
Target:  5'- aGAGCGGCgGCGUGAacauUCucAGcGGGCCGc -3'
miRNA:   3'- -CUCGCUGaCGCACU----AGcuUC-UCCGGC- -5'
6585 3' -55.7 NC_001847.1 + 59175 0.71 0.6645
Target:  5'- aGGgGGCgGCG--GUCGAGGGGGCCGu -3'
miRNA:   3'- cUCgCUGaCGCacUAGCUUCUCCGGC- -5'
6585 3' -55.7 NC_001847.1 + 116053 0.7 0.71543
Target:  5'- aGAGCGAaaGCGgGAgCGAAagcGGGGCCGa -3'
miRNA:   3'- -CUCGCUgaCGCaCUaGCUU---CUCCGGC- -5'
6585 3' -55.7 NC_001847.1 + 42193 0.69 0.735359
Target:  5'- cGAGcCGugUGC--GAUCGucGAGGCCa -3'
miRNA:   3'- -CUC-GCugACGcaCUAGCuuCUCCGGc -5'
6585 3' -55.7 NC_001847.1 + 27982 0.69 0.745192
Target:  5'- aGGCGGCcGCGgccgGggCGGAGGcGGCCGc -3'
miRNA:   3'- cUCGCUGaCGCa---CuaGCUUCU-CCGGC- -5'
6585 3' -55.7 NC_001847.1 + 130795 0.69 0.745192
Target:  5'- aGGCGGCcGCGgccgGggCGGAGGcGGCCGc -3'
miRNA:   3'- cUCGCUGaCGCa---CuaGCUUCU-CCGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.