miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6585 3' -55.7 NC_001847.1 + 485 0.66 0.896339
Target:  5'- cAGCGGCgGCGg---CGggGcGGCCGc -3'
miRNA:   3'- cUCGCUGaCGCacuaGCuuCuCCGGC- -5'
6585 3' -55.7 NC_001847.1 + 11964 0.68 0.810669
Target:  5'- aGAGCGACUcgagGCGUGccGUUGGcGGGGGCUc -3'
miRNA:   3'- -CUCGCUGA----CGCAC--UAGCU-UCUCCGGc -5'
6585 3' -55.7 NC_001847.1 + 12042 0.67 0.86357
Target:  5'- gGAGCGcuggacgcccugcgcGCUGCG-GA-CGccGAGGCCGc -3'
miRNA:   3'- -CUCGC---------------UGACGCaCUaGCuuCUCCGGC- -5'
6585 3' -55.7 NC_001847.1 + 12376 0.67 0.85268
Target:  5'- cGGCGGCUGCGgccUCGggGcgcguguGGUCGg -3'
miRNA:   3'- cUCGCUGACGCacuAGCuuCu------CCGGC- -5'
6585 3' -55.7 NC_001847.1 + 12476 0.68 0.801739
Target:  5'- -cGCGGCUucccGCGUGGcggCGggGGcGGCCa -3'
miRNA:   3'- cuCGCUGA----CGCACUa--GCuuCU-CCGGc -5'
6585 3' -55.7 NC_001847.1 + 12826 0.66 0.882678
Target:  5'- cGAGCGGC-GCGcu-UgGGAGAuGGCCGg -3'
miRNA:   3'- -CUCGCUGaCGCacuAgCUUCU-CCGGC- -5'
6585 3' -55.7 NC_001847.1 + 14652 0.68 0.810669
Target:  5'- cGAGCGgcGCUGaCGUGAacaUCGAcGGcgcGGCCGg -3'
miRNA:   3'- -CUCGC--UGAC-GCACU---AGCUuCU---CCGGC- -5'
6585 3' -55.7 NC_001847.1 + 14860 0.66 0.905345
Target:  5'- cGAGCG-UUGCGUcGGUCGGguGGAcagcgaacgcuacggGGCCGu -3'
miRNA:   3'- -CUCGCuGACGCA-CUAGCU--UCU---------------CCGGC- -5'
6585 3' -55.7 NC_001847.1 + 15341 0.66 0.875505
Target:  5'- cGGGCGGggggUGCGUGAuggcuUCGAGGcucGGCCa -3'
miRNA:   3'- -CUCGCUg---ACGCACU-----AGCUUCu--CCGGc -5'
6585 3' -55.7 NC_001847.1 + 21736 0.66 0.909062
Target:  5'- cGGGcCGGCgccggcccGCGcGcgCGggGGGGCCGc -3'
miRNA:   3'- -CUC-GCUGa-------CGCaCuaGCuuCUCCGGC- -5'
6585 3' -55.7 NC_001847.1 + 21872 0.66 0.896339
Target:  5'- cGGgGGCUGCG-GcgCGcugccGAGGCCGa -3'
miRNA:   3'- cUCgCUGACGCaCuaGCuu---CUCCGGC- -5'
6585 3' -55.7 NC_001847.1 + 25296 0.66 0.896339
Target:  5'- gGGGUGggaaGCUGCgGUGGUCGuccacAGGGGCgCGg -3'
miRNA:   3'- -CUCGC----UGACG-CACUAGCu----UCUCCG-GC- -5'
6585 3' -55.7 NC_001847.1 + 27982 0.69 0.745192
Target:  5'- aGGCGGCcGCGgccgGggCGGAGGcGGCCGc -3'
miRNA:   3'- cUCGCUGaCGCa---CuaGCUUCU-CCGGC- -5'
6585 3' -55.7 NC_001847.1 + 32624 0.69 0.764545
Target:  5'- gGAGCGGCUGCacgacgccGUGGaCGAgcuGGAGGgCGa -3'
miRNA:   3'- -CUCGCUGACG--------CACUaGCU---UCUCCgGC- -5'
6585 3' -55.7 NC_001847.1 + 32940 0.68 0.790817
Target:  5'- cGGCGGCggggccggggggGCGgagGAggcCGggGAGGCCa -3'
miRNA:   3'- cUCGCUGa-----------CGCa--CUa--GCuuCUCCGGc -5'
6585 3' -55.7 NC_001847.1 + 33335 0.67 0.8605
Target:  5'- cGGCGcGCUGCGUGA-CGGu-GGGCCc -3'
miRNA:   3'- cUCGC-UGACGCACUaGCUucUCCGGc -5'
6585 3' -55.7 NC_001847.1 + 33907 0.67 0.836435
Target:  5'- cGGGCcaGGCUGC----UCGggGAGGCUGg -3'
miRNA:   3'- -CUCG--CUGACGcacuAGCuuCUCCGGC- -5'
6585 3' -55.7 NC_001847.1 + 34473 0.66 0.879835
Target:  5'- cGGCGGCgaggaugcggacgGCGgcgagGAUgCGAGcGAGGCCGa -3'
miRNA:   3'- cUCGCUGa------------CGCa----CUA-GCUU-CUCCGGC- -5'
6585 3' -55.7 NC_001847.1 + 35772 0.66 0.875505
Target:  5'- cAGUGugUGCuaggcugGGUCGcAGGGGCCa -3'
miRNA:   3'- cUCGCugACGca-----CUAGCuUCUCCGGc -5'
6585 3' -55.7 NC_001847.1 + 36181 0.66 0.902819
Target:  5'- -uGCGGCg--GUGcgCGgcGAGGCCGc -3'
miRNA:   3'- cuCGCUGacgCACuaGCuuCUCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.