miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6585 3' -55.7 NC_001847.1 + 56596 1.09 0.002753
Target:  5'- uGAGCGACUGCGUGAUCGAAGAGGCCGa -3'
miRNA:   3'- -CUCGCUGACGCACUAGCUUCUCCGGC- -5'
6585 3' -55.7 NC_001847.1 + 60113 0.68 0.783419
Target:  5'- aAGCGcucGCgcgGCGUGAgCGAGGGGGCg- -3'
miRNA:   3'- cUCGC---UGa--CGCACUaGCUUCUCCGgc -5'
6585 3' -55.7 NC_001847.1 + 119882 0.68 0.810669
Target:  5'- -uGCGGCUGCGgcGAUCGcgugcGuGGCCGc -3'
miRNA:   3'- cuCGCUGACGCa-CUAGCuu---CuCCGGC- -5'
6585 3' -55.7 NC_001847.1 + 124549 0.66 0.909062
Target:  5'- cGGGcCGGCgccggcccGCGcGcgCGggGGGGCCGc -3'
miRNA:   3'- -CUC-GCUGa-------CGCaCuaGCuuCUCCGGC- -5'
6585 3' -55.7 NC_001847.1 + 99796 0.73 0.54145
Target:  5'- cAGCGcCUGUGgugcggGGUCGGAGcGGCCGg -3'
miRNA:   3'- cUCGCuGACGCa-----CUAGCUUCuCCGGC- -5'
6585 3' -55.7 NC_001847.1 + 102665 0.73 0.54145
Target:  5'- gGAGCGGCcGCGaGggCGggGGGGCgGg -3'
miRNA:   3'- -CUCGCUGaCGCaCuaGCuuCUCCGgC- -5'
6585 3' -55.7 NC_001847.1 + 53939 0.71 0.633549
Target:  5'- cGGCGGCUcUGUGcgCGAGGcGGCCGc -3'
miRNA:   3'- cUCGCUGAcGCACuaGCUUCuCCGGC- -5'
6585 3' -55.7 NC_001847.1 + 43580 0.71 0.643878
Target:  5'- cGGGCGACgcgcgccccaGCGUGG-CGcuGGGGCCGg -3'
miRNA:   3'- -CUCGCUGa---------CGCACUaGCuuCUCCGGC- -5'
6585 3' -55.7 NC_001847.1 + 116053 0.7 0.71543
Target:  5'- aGAGCGAaaGCGgGAgCGAAagcGGGGCCGa -3'
miRNA:   3'- -CUCGCUgaCGCaCUaGCUU---CUCCGGC- -5'
6585 3' -55.7 NC_001847.1 + 64522 0.69 0.764545
Target:  5'- aGAGUGGgaaaUG-GUGGUCGGAGccGGGCCGg -3'
miRNA:   3'- -CUCGCUg---ACgCACUAGCUUC--UCCGGC- -5'
6585 3' -55.7 NC_001847.1 + 130795 0.69 0.745192
Target:  5'- aGGCGGCcGCGgccgGggCGGAGGcGGCCGc -3'
miRNA:   3'- cUCGCUGaCGCa---CuaGCUUCU-CCGGC- -5'
6585 3' -55.7 NC_001847.1 + 59175 0.71 0.6645
Target:  5'- aGGgGGCgGCG--GUCGAGGGGGCCGu -3'
miRNA:   3'- cUCgCUGaCGCacUAGCUUCUCCGGC- -5'
6585 3' -55.7 NC_001847.1 + 81052 0.75 0.426861
Target:  5'- gGGGCGACguggGCGUGggCGggGccuGGCUGg -3'
miRNA:   3'- -CUCGCUGa---CGCACuaGCuuCu--CCGGC- -5'
6585 3' -55.7 NC_001847.1 + 80853 0.69 0.754924
Target:  5'- cGGGCGGCgGCGcg--CGucGAGGCCGu -3'
miRNA:   3'- -CUCGCUGaCGCacuaGCuuCUCCGGC- -5'
6585 3' -55.7 NC_001847.1 + 42633 0.74 0.451448
Target:  5'- gGGGCGGCaGCGccGAcgucgugcccuuugUCGAAGAGGCCGc -3'
miRNA:   3'- -CUCGCUGaCGCa-CU--------------AGCUUCUCCGGC- -5'
6585 3' -55.7 NC_001847.1 + 51598 0.71 0.654198
Target:  5'- aGAGCGGCgGCGUGAacauUCucAGcGGGCCGc -3'
miRNA:   3'- -CUCGCUGaCGCACU----AGcuUC-UCCGGC- -5'
6585 3' -55.7 NC_001847.1 + 32624 0.69 0.764545
Target:  5'- gGAGCGGCUGCacgacgccGUGGaCGAgcuGGAGGgCGa -3'
miRNA:   3'- -CUCGCUGACG--------CACUaGCU---UCUCCgGC- -5'
6585 3' -55.7 NC_001847.1 + 12476 0.68 0.801739
Target:  5'- -cGCGGCUucccGCGUGGcggCGggGGcGGCCa -3'
miRNA:   3'- cuCGCUGA----CGCACUa--GCuuCU-CCGGc -5'
6585 3' -55.7 NC_001847.1 + 37590 0.73 0.521501
Target:  5'- -uGCGGCUGCGg---CGGccGGGGGCCGg -3'
miRNA:   3'- cuCGCUGACGCacuaGCU--UCUCCGGC- -5'
6585 3' -55.7 NC_001847.1 + 44424 0.72 0.571824
Target:  5'- cGAGCGGCUGCGU--UCGcgcacGGGGGCgCGg -3'
miRNA:   3'- -CUCGCUGACGCAcuAGCu----UCUCCG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.