miRNA display CGI


Results 1 - 20 of 397 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6589 3' -59.5 NC_001847.1 + 100656 0.66 0.697059
Target:  5'- gGGC-CGCGCuGCuGCGGCGggGGGUc- -3'
miRNA:   3'- aUCGuGCGUGuCG-CGCUGCa-CCCGuu -5'
6589 3' -59.5 NC_001847.1 + 61963 0.66 0.675631
Target:  5'- -cGCGCGCcgugcccgcCGGCGCGGCGggcauaaUGGGCc- -3'
miRNA:   3'- auCGUGCGu--------GUCGCGCUGC-------ACCCGuu -5'
6589 3' -59.5 NC_001847.1 + 22152 0.66 0.672555
Target:  5'- cGGCGCGCAaaagcCGGCGCaGCGggccggccugcucGGGCGAg -3'
miRNA:   3'- aUCGUGCGU-----GUCGCGcUGCa------------CCCGUU- -5'
6589 3' -59.5 NC_001847.1 + 99310 0.66 0.670503
Target:  5'- cAGCuCGCGCAGCGCGuCGaugcgcuccgcaaaGGGCu- -3'
miRNA:   3'- aUCGuGCGUGUCGCGCuGCa-------------CCCGuu -5'
6589 3' -59.5 NC_001847.1 + 97797 0.66 0.666394
Target:  5'- cAGCucCGCACGGuCGCGcGCGUGGccGCGu -3'
miRNA:   3'- aUCGu-GCGUGUC-GCGC-UGCACC--CGUu -5'
6589 3' -59.5 NC_001847.1 + 95246 0.66 0.666394
Target:  5'- gGGCGCGaucgGgGGCGCGAuCGgGGGCGc -3'
miRNA:   3'- aUCGUGCg---UgUCGCGCU-GCaCCCGUu -5'
6589 3' -59.5 NC_001847.1 + 95210 0.66 0.666394
Target:  5'- gGGCGCGaucgGgGGCGCGAuCGgGGGCGc -3'
miRNA:   3'- aUCGUGCg---UgUCGCGCU-GCaCCCGUu -5'
6589 3' -59.5 NC_001847.1 + 95174 0.66 0.666394
Target:  5'- gGGCGCGaucgGgGGCGCGAuCGgGGGCGc -3'
miRNA:   3'- aUCGUGCg---UgUCGCGCU-GCaCCCGUu -5'
6589 3' -59.5 NC_001847.1 + 29339 0.66 0.666394
Target:  5'- gAGCGCGCGCGgcuccagcGCGCGGCcccGGCGg -3'
miRNA:   3'- aUCGUGCGUGU--------CGCGCUGcacCCGUu -5'
6589 3' -59.5 NC_001847.1 + 113592 0.66 0.676656
Target:  5'- aGGCucACGCACA-CGCGAUGUgccagcuuGGGCGc -3'
miRNA:   3'- aUCG--UGCGUGUcGCGCUGCA--------CCCGUu -5'
6589 3' -59.5 NC_001847.1 + 128790 0.66 0.676656
Target:  5'- cGGCuACGCccGCGGCGCGGuugcCGccgGGGCAc -3'
miRNA:   3'- aUCG-UGCG--UGUCGCGCU----GCa--CCCGUu -5'
6589 3' -59.5 NC_001847.1 + 4386 0.66 0.676656
Target:  5'- gAGCGCGCGCGcCGCGGCccaGGCGc -3'
miRNA:   3'- aUCGUGCGUGUcGCGCUGcacCCGUu -5'
6589 3' -59.5 NC_001847.1 + 47313 0.66 0.69706
Target:  5'- -cGCcCGC-CGGCGUGAUGUugcagcGGGCGAu -3'
miRNA:   3'- auCGuGCGuGUCGCGCUGCA------CCCGUU- -5'
6589 3' -59.5 NC_001847.1 + 20893 0.66 0.69706
Target:  5'- cGGCugGgcaGCgAGCGCGuCGcGGGCGAg -3'
miRNA:   3'- aUCGugCg--UG-UCGCGCuGCaCCCGUU- -5'
6589 3' -59.5 NC_001847.1 + 85648 0.66 0.696044
Target:  5'- aGGCGCGCGucagguuUGGCGCGGcCGUGcuGGCGc -3'
miRNA:   3'- aUCGUGCGU-------GUCGCGCU-GCAC--CCGUu -5'
6589 3' -59.5 NC_001847.1 + 51543 0.66 0.694012
Target:  5'- cGGCGCccaggcgucgGCGCAGCucgccagcgcuuccGCGGCGccgGGGCAGc -3'
miRNA:   3'- aUCGUG----------CGUGUCG--------------CGCUGCa--CCCGUU- -5'
6589 3' -59.5 NC_001847.1 + 62504 0.66 0.686881
Target:  5'- gUAGUugGCGCccacaaAGUGCGGCacGGGCGg -3'
miRNA:   3'- -AUCGugCGUG------UCGCGCUGcaCCCGUu -5'
6589 3' -59.5 NC_001847.1 + 60800 0.66 0.686881
Target:  5'- -cGCGCGCcacCAGCGCGcGCGccUGcGGCAGc -3'
miRNA:   3'- auCGUGCGu--GUCGCGC-UGC--AC-CCGUU- -5'
6589 3' -59.5 NC_001847.1 + 73857 0.66 0.686881
Target:  5'- cUGGCGCGCuaggcgGCGGCGCGGCGcccGCGc -3'
miRNA:   3'- -AUCGUGCG------UGUCGCGCUGCaccCGUu -5'
6589 3' -59.5 NC_001847.1 + 66517 0.66 0.686881
Target:  5'- gGGCugGaGCuGCGCGGCuggGGGCGc -3'
miRNA:   3'- aUCGugCgUGuCGCGCUGca-CCCGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.