miRNA display CGI


Results 1 - 20 of 397 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6589 3' -59.5 NC_001847.1 + 60000 1.04 0.001931
Target:  5'- cUAGCACGCACAGCGCGACGUGGGCAAa -3'
miRNA:   3'- -AUCGUGCGUGUCGCGCUGCACCCGUU- -5'
6589 3' -59.5 NC_001847.1 + 43245 0.8 0.106905
Target:  5'- gGGCGCGCggGCGGCGCGGCGcccgggGGGCAc -3'
miRNA:   3'- aUCGUGCG--UGUCGCGCUGCa-----CCCGUu -5'
6589 3' -59.5 NC_001847.1 + 50263 0.8 0.109775
Target:  5'- cUGGaCGCGCugGGCGCGuACGUGGGCc- -3'
miRNA:   3'- -AUC-GUGCGugUCGCGC-UGCACCCGuu -5'
6589 3' -59.5 NC_001847.1 + 36447 0.79 0.121987
Target:  5'- cGGCGCGCGCGGCGCGGCuGUGuGaGCGGg -3'
miRNA:   3'- aUCGUGCGUGUCGCGCUG-CAC-C-CGUU- -5'
6589 3' -59.5 NC_001847.1 + 69460 0.78 0.131963
Target:  5'- -cGCGCGCGCGGCgGCGGCG-GGGCu- -3'
miRNA:   3'- auCGUGCGUGUCG-CGCUGCaCCCGuu -5'
6589 3' -59.5 NC_001847.1 + 47873 0.78 0.135452
Target:  5'- gGGCGCGCGCAGCGCGcgcgcgcccgcGCGccgGGGCGc -3'
miRNA:   3'- aUCGUGCGUGUCGCGC-----------UGCa--CCCGUu -5'
6589 3' -59.5 NC_001847.1 + 18807 0.77 0.158223
Target:  5'- cGGCGCGCGcCAGCGCG-CGcaUGGGCAc -3'
miRNA:   3'- aUCGUGCGU-GUCGCGCuGC--ACCCGUu -5'
6589 3' -59.5 NC_001847.1 + 36092 0.77 0.166552
Target:  5'- cGGCugGCGgAGCGCGGCGacgcgcUGGGCGc -3'
miRNA:   3'- aUCGugCGUgUCGCGCUGC------ACCCGUu -5'
6589 3' -59.5 NC_001847.1 + 32545 0.77 0.166552
Target:  5'- -uGCGCGCGCAGCccuCGGCGcUGGGCGAc -3'
miRNA:   3'- auCGUGCGUGUCGc--GCUGC-ACCCGUU- -5'
6589 3' -59.5 NC_001847.1 + 3924 0.77 0.170862
Target:  5'- -cGCACGCACAGCGCuGGCaGcGGGCGg -3'
miRNA:   3'- auCGUGCGUGUCGCG-CUG-CaCCCGUu -5'
6589 3' -59.5 NC_001847.1 + 74345 0.77 0.170862
Target:  5'- aGGCGCGCGCGcugguggcGCGCGugGUGGcGCGc -3'
miRNA:   3'- aUCGUGCGUGU--------CGCGCugCACC-CGUu -5'
6589 3' -59.5 NC_001847.1 + 116558 0.77 0.170862
Target:  5'- cGGCGCGCuaAUGGCGC-ACGUGGGCAu -3'
miRNA:   3'- aUCGUGCG--UGUCGCGcUGCACCCGUu -5'
6589 3' -59.5 NC_001847.1 + 30437 0.76 0.175272
Target:  5'- -cGCACGCGCu-CGCGGCGcUGGGCAAc -3'
miRNA:   3'- auCGUGCGUGucGCGCUGC-ACCCGUU- -5'
6589 3' -59.5 NC_001847.1 + 133250 0.76 0.175272
Target:  5'- -cGCACGCGCu-CGCGGCGcUGGGCAAc -3'
miRNA:   3'- auCGUGCGUGucGCGCUGC-ACCCGUU- -5'
6589 3' -59.5 NC_001847.1 + 110809 0.76 0.179327
Target:  5'- aGGcCGCGCGCGGCGUGGCGcgccaccgcucgcUGGGCAu -3'
miRNA:   3'- aUC-GUGCGUGUCGCGCUGC-------------ACCCGUu -5'
6589 3' -59.5 NC_001847.1 + 116460 0.76 0.179783
Target:  5'- -cGCACGCGCGGCGCGguucugcucaGCGUcgcGGGCGGg -3'
miRNA:   3'- auCGUGCGUGUCGCGC----------UGCA---CCCGUU- -5'
6589 3' -59.5 NC_001847.1 + 32328 0.76 0.184396
Target:  5'- gGGCcCGCGCGGCGCGGCGcggaggGGGCc- -3'
miRNA:   3'- aUCGuGCGUGUCGCGCUGCa-----CCCGuu -5'
6589 3' -59.5 NC_001847.1 + 47710 0.76 0.189114
Target:  5'- gAGCGCGCGCagcagcucuucgAGCGCGGCGggcgGGGCc- -3'
miRNA:   3'- aUCGUGCGUG------------UCGCGCUGCa---CCCGuu -5'
6589 3' -59.5 NC_001847.1 + 30990 0.76 0.198868
Target:  5'- aUGGcCGCGCAgGGCGCGGCGcugGGGCu- -3'
miRNA:   3'- -AUC-GUGCGUgUCGCGCUGCa--CCCGuu -5'
6589 3' -59.5 NC_001847.1 + 133803 0.76 0.198868
Target:  5'- aUGGcCGCGCAgGGCGCGGCGcugGGGCu- -3'
miRNA:   3'- -AUC-GUGCGUgUCGCGCUGCa--CCCGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.