miRNA display CGI


Results 1 - 20 of 397 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6589 3' -59.5 NC_001847.1 + 51 0.72 0.329497
Target:  5'- cGGCGCGUGCAuUGCGGCGggcggGGGCGGg -3'
miRNA:   3'- aUCGUGCGUGUcGCGCUGCa----CCCGUU- -5'
6589 3' -59.5 NC_001847.1 + 476 0.68 0.543385
Target:  5'- cGGCG-GCAgCAGCgGCGGCGgcgGGGCGg -3'
miRNA:   3'- aUCGUgCGU-GUCG-CGCUGCa--CCCGUu -5'
6589 3' -59.5 NC_001847.1 + 1389 0.75 0.23079
Target:  5'- cAGCACGCGCugccgguacucGCGCGGCGgcacGGGCAc -3'
miRNA:   3'- aUCGUGCGUGu----------CGCGCUGCa---CCCGUu -5'
6589 3' -59.5 NC_001847.1 + 1580 0.72 0.344794
Target:  5'- cGGCGCGCGcCAGCGCGcCGcucGGGCc- -3'
miRNA:   3'- aUCGUGCGU-GUCGCGCuGCa--CCCGuu -5'
6589 3' -59.5 NC_001847.1 + 1908 0.7 0.427768
Target:  5'- gAGCGCGUgcgagagcccgccGCGGCGCGGCGgccacucGGGCc- -3'
miRNA:   3'- aUCGUGCG-------------UGUCGCGCUGCa------CCCGuu -5'
6589 3' -59.5 NC_001847.1 + 1935 0.67 0.614832
Target:  5'- uUAGCcgGCGCGCGGCGCaGagcuccuccaGCGaGGGCAGc -3'
miRNA:   3'- -AUCG--UGCGUGUCGCG-C----------UGCaCCCGUU- -5'
6589 3' -59.5 NC_001847.1 + 2234 0.7 0.428665
Target:  5'- -cGCgGCGCugGGCGCgGGCGUGuGGUAGu -3'
miRNA:   3'- auCG-UGCGugUCGCG-CUGCAC-CCGUU- -5'
6589 3' -59.5 NC_001847.1 + 3294 0.74 0.248316
Target:  5'- cGGCGCGCagcucgGCgAGCGCGGCGcGGGCGc -3'
miRNA:   3'- aUCGUGCG------UG-UCGCGCUGCaCCCGUu -5'
6589 3' -59.5 NC_001847.1 + 3883 0.66 0.666394
Target:  5'- cGGCccguCGCGCGGCgccGCGGCGUagccagcgcGGGCGc -3'
miRNA:   3'- aUCGu---GCGUGUCG---CGCUGCA---------CCCGUu -5'
6589 3' -59.5 NC_001847.1 + 3924 0.77 0.170862
Target:  5'- -cGCACGCACAGCGCuGGCaGcGGGCGg -3'
miRNA:   3'- auCGUGCGUGUCGCG-CUG-CaCCCGUu -5'
6589 3' -59.5 NC_001847.1 + 3938 0.67 0.62515
Target:  5'- -cGCugGCGC--CGCGGCGggggGGGCGc -3'
miRNA:   3'- auCGugCGUGucGCGCUGCa---CCCGUu -5'
6589 3' -59.5 NC_001847.1 + 3952 0.73 0.28665
Target:  5'- gAGCgcgacccacaGCGC-CAGCGCGAgGUGGGCc- -3'
miRNA:   3'- aUCG----------UGCGuGUCGCGCUgCACCCGuu -5'
6589 3' -59.5 NC_001847.1 + 4386 0.66 0.676656
Target:  5'- gAGCGCGCGCGcCGCGGCccaGGCGc -3'
miRNA:   3'- aUCGUGCGUGUcGCGCUGcacCCGUu -5'
6589 3' -59.5 NC_001847.1 + 4965 0.67 0.608647
Target:  5'- -cGCGCGCGCcgggggggcagcuggGGUGCGGCGgccGcGGCAAa -3'
miRNA:   3'- auCGUGCGUG---------------UCGCGCUGCa--C-CCGUU- -5'
6589 3' -59.5 NC_001847.1 + 5353 0.68 0.523424
Target:  5'- -uGguCGCGCGGCGCGGCc-GGGCc- -3'
miRNA:   3'- auCguGCGUGUCGCGCUGcaCCCGuu -5'
6589 3' -59.5 NC_001847.1 + 5589 0.67 0.588086
Target:  5'- gUGGC-CGCGCGGUaGCuccacucgguagacgGGCGUGGGCGc -3'
miRNA:   3'- -AUCGuGCGUGUCG-CG---------------CUGCACCCGUu -5'
6589 3' -59.5 NC_001847.1 + 5661 0.66 0.645794
Target:  5'- aGGCcCGCccaGGCGCGAagGUGGGCc- -3'
miRNA:   3'- aUCGuGCGug-UCGCGCUg-CACCCGuu -5'
6589 3' -59.5 NC_001847.1 + 5763 0.68 0.553459
Target:  5'- cGGCGCGCcaacgcgaAGCGCGGCGUcuagccccGGGCc- -3'
miRNA:   3'- aUCGUGCGug------UCGCGCUGCA--------CCCGuu -5'
6589 3' -59.5 NC_001847.1 + 5961 0.68 0.560544
Target:  5'- -cGUACGCGCGcGCGCGuaagccucggcuuuGCGggGGGCAGc -3'
miRNA:   3'- auCGUGCGUGU-CGCGC--------------UGCa-CCCGUU- -5'
6589 3' -59.5 NC_001847.1 + 7198 0.67 0.594243
Target:  5'- gAGCGCGUccuCgAGCGCGGC-UGGGCc- -3'
miRNA:   3'- aUCGUGCGu--G-UCGCGCUGcACCCGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.