miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6592 3' -50.8 NC_001847.1 + 61232 1.12 0.007219
Target:  5'- cGGUGAACGUCGUCCACGUACGCAACGc -3'
miRNA:   3'- -CCACUUGCAGCAGGUGCAUGCGUUGC- -5'
6592 3' -50.8 NC_001847.1 + 96487 0.8 0.496716
Target:  5'- cGGcGGGCGUCG-CCACGgcaACGCGGCGg -3'
miRNA:   3'- -CCaCUUGCAGCaGGUGCa--UGCGUUGC- -5'
6592 3' -50.8 NC_001847.1 + 102755 0.79 0.546856
Target:  5'- --gGGGCGUCGUgCCGCGUGCGCG-CGc -3'
miRNA:   3'- ccaCUUGCAGCA-GGUGCAUGCGUuGC- -5'
6592 3' -50.8 NC_001847.1 + 12561 0.78 0.588084
Target:  5'- aGGUGcgcAACGggCG-CCGCGUACGCGGCGc -3'
miRNA:   3'- -CCAC---UUGCa-GCaGGUGCAUGCGUUGC- -5'
6592 3' -50.8 NC_001847.1 + 55826 0.78 0.608927
Target:  5'- cGUGAcguCGUCGUCCAUGacGCGCAGCu -3'
miRNA:   3'- cCACUu--GCAGCAGGUGCa-UGCGUUGc -5'
6592 3' -50.8 NC_001847.1 + 32273 0.76 0.712864
Target:  5'- cGUGGcucGCGcCGUCCGCGUgGCGCGGCc -3'
miRNA:   3'- cCACU---UGCaGCAGGUGCA-UGCGUUGc -5'
6592 3' -50.8 NC_001847.1 + 62694 0.75 0.743072
Target:  5'- uGGUGcAGCGccgCGUCCAgCGUGCGCAuguuccgcguuGCGg -3'
miRNA:   3'- -CCAC-UUGCa--GCAGGU-GCAUGCGU-----------UGC- -5'
6592 3' -50.8 NC_001847.1 + 84943 0.75 0.762721
Target:  5'- ------aGUCGUCCACGcACGCGACGu -3'
miRNA:   3'- ccacuugCAGCAGGUGCaUGCGUUGC- -5'
6592 3' -50.8 NC_001847.1 + 77271 0.74 0.809555
Target:  5'- --cGGGCGUCGUCCuugaGCGcGCGCGugGu -3'
miRNA:   3'- ccaCUUGCAGCAGG----UGCaUGCGUugC- -5'
6592 3' -50.8 NC_001847.1 + 56876 0.74 0.818454
Target:  5'- aGGcGAGCaGgcaGUCCAgGUGCGCGGCGa -3'
miRNA:   3'- -CCaCUUG-Cag-CAGGUgCAUGCGUUGC- -5'
6592 3' -50.8 NC_001847.1 + 134277 0.73 0.844055
Target:  5'- uGGUGAACGUCaccggGUCCAUcUGCGCGuCa -3'
miRNA:   3'- -CCACUUGCAG-----CAGGUGcAUGCGUuGc -5'
6592 3' -50.8 NC_001847.1 + 8387 0.73 0.844055
Target:  5'- cGUGGGCGUCuG-CCGCGUAgGCuACGg -3'
miRNA:   3'- cCACUUGCAG-CaGGUGCAUgCGuUGC- -5'
6592 3' -50.8 NC_001847.1 + 32220 0.73 0.852196
Target:  5'- -uUGGACGcCGUCCagGCGcACGCGGCGu -3'
miRNA:   3'- ccACUUGCaGCAGG--UGCaUGCGUUGC- -5'
6592 3' -50.8 NC_001847.1 + 130628 0.73 0.860129
Target:  5'- --cGAggcACGUCGUgCgCACGUugGCGGCGa -3'
miRNA:   3'- ccaCU---UGCAGCA-G-GUGCAugCGUUGC- -5'
6592 3' -50.8 NC_001847.1 + 3812 0.73 0.867847
Target:  5'- cGGcacgGGGCGUCGgCCGCGaGCGUGGCGu -3'
miRNA:   3'- -CCa---CUUGCAGCaGGUGCaUGCGUUGC- -5'
6592 3' -50.8 NC_001847.1 + 53425 0.72 0.875343
Target:  5'- cGGaUGAugGCGUCGgcgCgCGCGUGcCGCAGCGc -3'
miRNA:   3'- -CC-ACU--UGCAGCa--G-GUGCAU-GCGUUGC- -5'
6592 3' -50.8 NC_001847.1 + 67619 0.72 0.882613
Target:  5'- cGGaGGAUGUCGUuggCCGCGUcCGCGACc -3'
miRNA:   3'- -CCaCUUGCAGCA---GGUGCAuGCGUUGc -5'
6592 3' -50.8 NC_001847.1 + 40163 0.72 0.889649
Target:  5'- cGGUGAcUGggCGUCCugGU-CGCGGCu -3'
miRNA:   3'- -CCACUuGCa-GCAGGugCAuGCGUUGc -5'
6592 3' -50.8 NC_001847.1 + 113695 0.72 0.889649
Target:  5'- cGGcUGc-CG-CGUCCGCGUGCGgGACGg -3'
miRNA:   3'- -CC-ACuuGCaGCAGGUGCAUGCgUUGC- -5'
6592 3' -50.8 NC_001847.1 + 22335 0.71 0.915391
Target:  5'- gGGUGuuGACGUCGaUgGCGagGCGCAGCGc -3'
miRNA:   3'- -CCAC--UUGCAGCaGgUGCa-UGCGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.