miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6592 3' -50.8 NC_001847.1 + 1072 0.69 0.965854
Target:  5'- uGGUccGCGUCccaGUCCACGccggGCGCcGCGg -3'
miRNA:   3'- -CCAcuUGCAG---CAGGUGCa---UGCGuUGC- -5'
6592 3' -50.8 NC_001847.1 + 2075 0.66 0.995125
Target:  5'- cGGUGGcgGCGagCGccCCGCGgggcccGCGCGGCGg -3'
miRNA:   3'- -CCACU--UGCa-GCa-GGUGCa-----UGCGUUGC- -5'
6592 3' -50.8 NC_001847.1 + 2245 0.7 0.954989
Target:  5'- -aUGAGCGUCucCCAgGUgACGCGGCGg -3'
miRNA:   3'- ccACUUGCAGcaGGUgCA-UGCGUUGC- -5'
6592 3' -50.8 NC_001847.1 + 3812 0.73 0.867847
Target:  5'- cGGcacgGGGCGUCGgCCGCGaGCGUGGCGu -3'
miRNA:   3'- -CCa---CUUGCAGCaGGUGCaUGCGUUGC- -5'
6592 3' -50.8 NC_001847.1 + 4592 0.67 0.988761
Target:  5'- cGGUGcGCGgcgacgaaggCGgCCACGUcguCGCAGCGc -3'
miRNA:   3'- -CCACuUGCa---------GCaGGUGCAu--GCGUUGC- -5'
6592 3' -50.8 NC_001847.1 + 6747 0.69 0.971979
Target:  5'- --cGGGCGUCGUCUGCGgu-GCGGCc -3'
miRNA:   3'- ccaCUUGCAGCAGGUGCaugCGUUGc -5'
6592 3' -50.8 NC_001847.1 + 7197 0.68 0.983775
Target:  5'- --gGAGCG-CGUCCuCGaGCGCGGCu -3'
miRNA:   3'- ccaCUUGCaGCAGGuGCaUGCGUUGc -5'
6592 3' -50.8 NC_001847.1 + 8387 0.73 0.844055
Target:  5'- cGUGGGCGUCuG-CCGCGUAgGCuACGg -3'
miRNA:   3'- cCACUUGCAG-CaGGUGCAUgCGuUGC- -5'
6592 3' -50.8 NC_001847.1 + 9523 0.67 0.988175
Target:  5'- --cGAGCGggcggcgcgcuagCGUCCguGCGUGCGcCAGCGc -3'
miRNA:   3'- ccaCUUGCa------------GCAGG--UGCAUGC-GUUGC- -5'
6592 3' -50.8 NC_001847.1 + 11895 0.68 0.983775
Target:  5'- uGGUGcggcCGggGUCCGCGcugGCGCGGCa -3'
miRNA:   3'- -CCACuu--GCagCAGGUGCa--UGCGUUGc -5'
6592 3' -50.8 NC_001847.1 + 12561 0.78 0.588084
Target:  5'- aGGUGcgcAACGggCG-CCGCGUACGCGGCGc -3'
miRNA:   3'- -CCAC---UUGCa-GCaGGUGCAUGCGUUGC- -5'
6592 3' -50.8 NC_001847.1 + 14167 0.66 0.995125
Target:  5'- --aGGGCGaCGgCCGCGcuUACGCGGCGc -3'
miRNA:   3'- ccaCUUGCaGCaGGUGC--AUGCGUUGC- -5'
6592 3' -50.8 NC_001847.1 + 14697 0.68 0.979622
Target:  5'- --cGAaagGCGUCGUUCGCG-ACGCG-CGg -3'
miRNA:   3'- ccaCU---UGCAGCAGGUGCaUGCGUuGC- -5'
6592 3' -50.8 NC_001847.1 + 15306 0.71 0.915391
Target:  5'- cGGcacGGCGUCGggggCCGCGgGCGUAGCGg -3'
miRNA:   3'- -CCac-UUGCAGCa---GGUGCaUGCGUUGC- -5'
6592 3' -50.8 NC_001847.1 + 17156 0.66 0.992465
Target:  5'- gGGUGGGCGguuggcgucgCGUCCuCGaGCGUaagGACGg -3'
miRNA:   3'- -CCACUUGCa---------GCAGGuGCaUGCG---UUGC- -5'
6592 3' -50.8 NC_001847.1 + 17378 0.69 0.969024
Target:  5'- uGUGGAUGUCGgcgcccaCCAUGaGCGUGACGc -3'
miRNA:   3'- cCACUUGCAGCa------GGUGCaUGCGUUGC- -5'
6592 3' -50.8 NC_001847.1 + 18425 0.67 0.990126
Target:  5'- --aGGGCcUUGgCCACGUGCGCcGCGg -3'
miRNA:   3'- ccaCUUGcAGCaGGUGCAUGCGuUGC- -5'
6592 3' -50.8 NC_001847.1 + 18653 0.66 0.99434
Target:  5'- cGGUGAGCGaUCcggcgggaGUgCAgGUACGCGAgGc -3'
miRNA:   3'- -CCACUUGC-AG--------CAgGUgCAUGCGUUgC- -5'
6592 3' -50.8 NC_001847.1 + 22335 0.71 0.915391
Target:  5'- gGGUGuuGACGUCGaUgGCGagGCGCAGCGc -3'
miRNA:   3'- -CCAC--UUGCAGCaGgUGCa-UGCGUUGC- -5'
6592 3' -50.8 NC_001847.1 + 22406 0.71 0.932101
Target:  5'- cGGcGAGCGugcUCGUCCGCGgggGCGgGGCc -3'
miRNA:   3'- -CCaCUUGC---AGCAGGUGCa--UGCgUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.