miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6592 3' -50.8 NC_001847.1 + 61232 1.12 0.007219
Target:  5'- cGGUGAACGUCGUCCACGUACGCAACGc -3'
miRNA:   3'- -CCACUUGCAGCAGGUGCAUGCGUUGC- -5'
6592 3' -50.8 NC_001847.1 + 72396 0.69 0.968407
Target:  5'- uGGUGGACGcgggccccgacgCGgggacggCCACGgcCGCAACGc -3'
miRNA:   3'- -CCACUUGCa-----------GCa------GGUGCauGCGUUGC- -5'
6592 3' -50.8 NC_001847.1 + 78669 0.69 0.971979
Target:  5'- ----uGCGUCGcCgGCGUGCGCAcGCGg -3'
miRNA:   3'- ccacuUGCAGCaGgUGCAUGCGU-UGC- -5'
6592 3' -50.8 NC_001847.1 + 130789 0.66 0.995819
Target:  5'- cGGUGGAgG-CGgCCGCGgcCGgGGCGg -3'
miRNA:   3'- -CCACUUgCaGCaGGUGCauGCgUUGC- -5'
6592 3' -50.8 NC_001847.1 + 3812 0.73 0.867847
Target:  5'- cGGcacgGGGCGUCGgCCGCGaGCGUGGCGu -3'
miRNA:   3'- -CCa---CUUGCAGCaGGUGCaUGCGUUGC- -5'
6592 3' -50.8 NC_001847.1 + 67619 0.72 0.882613
Target:  5'- cGGaGGAUGUCGUuggCCGCGUcCGCGACc -3'
miRNA:   3'- -CCaCUUGCAGCA---GGUGCAuGCGUUGc -5'
6592 3' -50.8 NC_001847.1 + 33136 0.71 0.926781
Target:  5'- cGGcGAGCG-CuUCCGCGUggcgaGCGCGGCGg -3'
miRNA:   3'- -CCaCUUGCaGcAGGUGCA-----UGCGUUGC- -5'
6592 3' -50.8 NC_001847.1 + 85791 0.71 0.926781
Target:  5'- cGGUGcGCGUCGagggugcgggCGCGUGCaGCGACGg -3'
miRNA:   3'- -CCACuUGCAGCag--------GUGCAUG-CGUUGC- -5'
6592 3' -50.8 NC_001847.1 + 122566 0.7 0.937172
Target:  5'- --cGAguGCGagGgcgCCGCGUACGCGGCGc -3'
miRNA:   3'- ccaCU--UGCagCa--GGUGCAUGCGUUGC- -5'
6592 3' -50.8 NC_001847.1 + 103885 0.69 0.965854
Target:  5'- uGGUccGCGUCccaGUCCACGccggGCGCcGCGg -3'
miRNA:   3'- -CCAcuUGCAG---CAGGUGCa---UGCGuUGC- -5'
6592 3' -50.8 NC_001847.1 + 28847 0.7 0.950899
Target:  5'- --aGAACGcgCGgCCGCGcGCGCGACGc -3'
miRNA:   3'- ccaCUUGCa-GCaGGUGCaUGCGUUGC- -5'
6592 3' -50.8 NC_001847.1 + 102535 0.71 0.932101
Target:  5'- cGGUGAuCG-CGUCCAgGcagAUGCAGCa -3'
miRNA:   3'- -CCACUuGCaGCAGGUgCa--UGCGUUGc -5'
6592 3' -50.8 NC_001847.1 + 32273 0.76 0.712864
Target:  5'- cGUGGcucGCGcCGUCCGCGUgGCGCGGCc -3'
miRNA:   3'- cCACU---UGCaGCAGGUGCA-UGCGUUGc -5'
6592 3' -50.8 NC_001847.1 + 2245 0.7 0.954989
Target:  5'- -aUGAGCGUCucCCAgGUgACGCGGCGg -3'
miRNA:   3'- ccACUUGCAGcaGGUgCA-UGCGUUGC- -5'
6592 3' -50.8 NC_001847.1 + 8387 0.73 0.844055
Target:  5'- cGUGGGCGUCuG-CCGCGUAgGCuACGg -3'
miRNA:   3'- cCACUUGCAG-CaGGUGCAUgCGuUGC- -5'
6592 3' -50.8 NC_001847.1 + 125219 0.71 0.932101
Target:  5'- cGGcGAGCGugcUCGUCCGCGgggGCGgGGCc -3'
miRNA:   3'- -CCaCUUGC---AGCAGGUGCa--UGCgUUGc -5'
6592 3' -50.8 NC_001847.1 + 64105 0.69 0.965854
Target:  5'- -cUGGACGU-GUCCgcggcgccagacGCGUGCGCGGCc -3'
miRNA:   3'- ccACUUGCAgCAGG------------UGCAUGCGUUGc -5'
6592 3' -50.8 NC_001847.1 + 128123 0.69 0.969024
Target:  5'- --cGGugGUCGUCCACagggGCGCGGg- -3'
miRNA:   3'- ccaCUugCAGCAGGUGca--UGCGUUgc -5'
6592 3' -50.8 NC_001847.1 + 32220 0.73 0.852196
Target:  5'- -uUGGACGcCGUCCagGCGcACGCGGCGu -3'
miRNA:   3'- ccACUUGCaGCAGG--UGCaUGCGUUGC- -5'
6592 3' -50.8 NC_001847.1 + 125148 0.71 0.915391
Target:  5'- gGGUGuuGACGUCGaUgGCGagGCGCAGCGc -3'
miRNA:   3'- -CCAC--UUGCAGCaGgUGCa-UGCGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.