miRNA display CGI

Results 1 - 20 of 1679 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
6592	5'	-68.8	NC_001847.1	+	61267	1.1	0.000174
	Target:  5'- gUCCGCGGCGCGCGCGGGCGCCGCGCCg -3' miRNA:   3'- -AGGCGCCGCGCGCGCCCGCGGCGCGG- -5'
6592	5'	-68.8	NC_001847.1	+	56831	0.95	0.002421
	Target:  5'- cCCGCGGCGCGCGCGccGCGCCGCGCCg -3' miRNA:   3'- aGGCGCCGCGCGCGCc-CGCGGCGCGG- -5'
6592	5'	-68.8	NC_001847.1	+	13118	0.92	0.004247
	Target:  5'- gCCGgGGCGCGCGgGcGGCGCCGCGCCg -3' miRNA:   3'- aGGCgCCGCGCGCgC-CCGCGGCGCGG- -5'
6592	5'	-68.8	NC_001847.1	+	102846	0.9	0.006071
	Target:  5'- uUCCGCGGCgGCGuCGCGGG-GCCGCGCCa -3' miRNA:   3'- -AGGCGCCG-CGC-GCGCCCgCGGCGCGG- -5'
6592	5'	-68.8	NC_001847.1	+	102997	0.9	0.006724
	Target:  5'- gUCGCGGCGUGCGCGGGCGCgGCGgCg -3' miRNA:   3'- aGGCGCCGCGCGCGCCCGCGgCGCgG- -5'
6592	5'	-68.8	NC_001847.1	+	71925	0.88	0.0089
	Target:  5'- -gCGCGGCGCGCGCacgcguaaacGGCGCCGCGCCg -3' miRNA:   3'- agGCGCCGCGCGCGc---------CCGCGGCGCGG- -5'
6592	5'	-68.8	NC_001847.1	+	106117	0.88	0.00913
	Target:  5'- cUCgGCGaGCGCgGCGCGGGCGCCGCuGCCg -3' miRNA:   3'- -AGgCGC-CGCG-CGCGCCCGCGGCG-CGG- -5'
6592	5'	-68.8	NC_001847.1	+	3304	0.88	0.00913
	Target:  5'- cUCgGCGaGCGCgGCGCGGGCGCCGCuGCCg -3' miRNA:   3'- -AGgCGC-CGCG-CGCGCCCGCGGCG-CGG- -5'
6592	5'	-68.8	NC_001847.1	+	58077	0.87	0.010637
	Target:  5'- -gCGCGcGCGCGCcgcaGCGGGUGCCGCGCCg -3' miRNA:   3'- agGCGC-CGCGCG----CGCCCGCGGCGCGG- -5'
6592	5'	-68.8	NC_001847.1	+	106712	0.87	0.011192
	Target:  5'- gCCGCGGCGUagccaGCGCGGGCGCCgguugcGCGCCc -3' miRNA:   3'- aGGCGCCGCG-----CGCGCCCGCGG------CGCGG- -5'
6592	5'	-68.8	NC_001847.1	+	3899	0.87	0.011192
	Target:  5'- gCCGCGGCGUagccaGCGCGGGCGCCgguugcGCGCCc -3' miRNA:   3'- aGGCGCCGCG-----CGCGCCCGCGG------CGCGG- -5'
6592	5'	-68.8	NC_001847.1	+	116312	0.87	0.011192
	Target:  5'- -gUGCGGCGCGCGCGaGGaCGCCGUGCCc -3' miRNA:   3'- agGCGCCGCGCGCGC-CC-GCGGCGCGG- -5'
6592	5'	-68.8	NC_001847.1	+	36353	0.86	0.01208
	Target:  5'- gCCGCGGCGCGCGCacgcGGCGCCGCcgcgGCCc -3' miRNA:   3'- aGGCGCCGCGCGCGc---CCGCGGCG----CGG- -5'
6592	5'	-68.8	NC_001847.1	+	132567	0.86	0.01208
	Target:  5'- gCCGCGGCGgcCGCGCaGGCGcCCGCGCCg -3' miRNA:   3'- aGGCGCCGC--GCGCGcCCGC-GGCGCGG- -5'
6592	5'	-68.8	NC_001847.1	+	99016	0.86	0.012711
	Target:  5'- gUCCGCGGCGCGCGCGgcuucguggaaGGCGCCcaGCGCg -3' miRNA:   3'- -AGGCGCCGCGCGCGC-----------CCGCGG--CGCGg -5'
6592	5'	-68.8	NC_001847.1	+	28403	0.86	0.013718
	Target:  5'- gCCGCGGCGCcaGCGCGGGCGCgcaaccggcgccCGCGCUg -3' miRNA:   3'- aGGCGCCGCG--CGCGCCCGCG------------GCGCGG- -5'
6592	5'	-68.8	NC_001847.1	+	131216	0.86	0.013718
	Target:  5'- gCCGCGGCGCcaGCGCGGGCGCgcaaccggcgccCGCGCUg -3' miRNA:   3'- aGGCGCCGCG--CGCGCCCGCG------------GCGCGG- -5'
6592	5'	-68.8	NC_001847.1	+	43126	0.85	0.014433
	Target:  5'- cCCGCagacGGCGCGggccCGCGGGCGCUGCGCCc -3' miRNA:   3'- aGGCG----CCGCGC----GCGCCCGCGGCGCGG- -5'
6592	5'	-68.8	NC_001847.1	+	98763	0.85	0.015147
	Target:  5'- gCCGCGGCGCGCGCugcccgggccgcgGcGGCGCCGCGUg -3' miRNA:   3'- aGGCGCCGCGCGCG-------------C-CCGCGGCGCGg -5'
6592	5'	-68.8	NC_001847.1	+	106667	0.85	0.015185
	Target:  5'- gCCGCGGCGUcCGCGGcGCGUCGUGCCa -3' miRNA:   3'- aGGCGCCGCGcGCGCC-CGCGGCGCGG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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