miRNA display CGI


Results 1 - 20 of 1679 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6592 5' -68.8 NC_001847.1 + 3 0.74 0.09906
Target:  5'- cUCCGCGccGCGcCGCGCGGGCcccCUGCGaCCc -3'
miRNA:   3'- -AGGCGC--CGC-GCGCGCCCGc--GGCGC-GG- -5'
6592 5' -68.8 NC_001847.1 + 48 0.68 0.252011
Target:  5'- -gCGCGGCGCGUgcauugcggcggGCGGGgGCgGgGUg -3'
miRNA:   3'- agGCGCCGCGCG------------CGCCCgCGgCgCGg -5'
6592 5' -68.8 NC_001847.1 + 69 0.69 0.220447
Target:  5'- ---uCGGCGCG-GCGGGC-CCGgGCCc -3'
miRNA:   3'- aggcGCCGCGCgCGCCCGcGGCgCGG- -5'
6592 5' -68.8 NC_001847.1 + 208 0.66 0.34705
Target:  5'- cCCGCccccGGCGCcCGgGGGC-CCGaGCCc -3'
miRNA:   3'- aGGCG----CCGCGcGCgCCCGcGGCgCGG- -5'
6592 5' -68.8 NC_001847.1 + 284 0.77 0.057676
Target:  5'- gCCGcCGaGCcCGCGCGGGCGCCguccccGCGCCc -3'
miRNA:   3'- aGGC-GC-CGcGCGCGCCCGCGG------CGCGG- -5'
6592 5' -68.8 NC_001847.1 + 378 0.7 0.183662
Target:  5'- cCCGCGcGcCGCGCGCcGGa-CCGCGCUc -3'
miRNA:   3'- aGGCGC-C-GCGCGCGcCCgcGGCGCGG- -5'
6592 5' -68.8 NC_001847.1 + 421 0.7 0.192316
Target:  5'- gCC-CGGgGCGgGCGGGCGgCgGCGgCg -3'
miRNA:   3'- aGGcGCCgCGCgCGCCCGC-GgCGCgG- -5'
6592 5' -68.8 NC_001847.1 + 458 0.72 0.145043
Target:  5'- gUCCGCucucacuagcuucGGCGC-CGUcauGGGUGcCCGCGCCu -3'
miRNA:   3'- -AGGCG-------------CCGCGcGCG---CCCGC-GGCGCGG- -5'
6592 5' -68.8 NC_001847.1 + 487 0.74 0.09906
Target:  5'- gCgGCGGCG-GCG-GGGCgGCCGCGCg -3'
miRNA:   3'- aGgCGCCGCgCGCgCCCG-CGGCGCGg -5'
6592 5' -68.8 NC_001847.1 + 523 0.69 0.227496
Target:  5'- gUCCGCGGagggcaaGUGCccgacGCGGGgaacguggcggcggaCGCCaGCGCCg -3'
miRNA:   3'- -AGGCGCCg------CGCG-----CGCCC---------------GCGG-CGCGG- -5'
6592 5' -68.8 NC_001847.1 + 602 0.79 0.041699
Target:  5'- cUCCGCGGCcgcuccgcagcgGCGCGC-GGC-CCGCGCCu -3'
miRNA:   3'- -AGGCGCCG------------CGCGCGcCCGcGGCGCGG- -5'
6592 5' -68.8 NC_001847.1 + 882 0.75 0.083513
Target:  5'- gCgGCGGCcCGCGCcgGGGcCGCCGCgGCCg -3'
miRNA:   3'- aGgCGCCGcGCGCG--CCC-GCGGCG-CGG- -5'
6592 5' -68.8 NC_001847.1 + 949 0.75 0.087701
Target:  5'- cCCGCGcGCGCcgcuccacgcuGCGcCGGGCGUCuauGCGCCg -3'
miRNA:   3'- aGGCGC-CGCG-----------CGC-GCCCGCGG---CGCGG- -5'
6592 5' -68.8 NC_001847.1 + 1030 0.68 0.246503
Target:  5'- cCCGCGGCGCGcCGCa-GCaGCacgaGCGUCu -3'
miRNA:   3'- aGGCGCCGCGC-GCGccCG-CGg---CGCGG- -5'
6592 5' -68.8 NC_001847.1 + 1099 0.8 0.034112
Target:  5'- gCCGCGGcCGCGgGCGGcGcCGCCGCgGCCu -3'
miRNA:   3'- aGGCGCC-GCGCgCGCC-C-GCGGCG-CGG- -5'
6592 5' -68.8 NC_001847.1 + 1139 0.73 0.123078
Target:  5'- gCgGCGGCGCcucgGCGCGcGGCuccggcagcgcgGCCGCGCa -3'
miRNA:   3'- aGgCGCCGCG----CGCGC-CCG------------CGGCGCGg -5'
6592 5' -68.8 NC_001847.1 + 1192 0.74 0.101494
Target:  5'- gCCGCGGCcggcaGCuCGuCGGGCGCCagcuccagcgcGCGCCg -3'
miRNA:   3'- aGGCGCCG-----CGcGC-GCCCGCGG-----------CGCGG- -5'
6592 5' -68.8 NC_001847.1 + 1204 0.76 0.077017
Target:  5'- cUCCGUGcGCucgguguucuuuuaGCGCGCGGGCGCCcGUGUg -3'
miRNA:   3'- -AGGCGC-CG--------------CGCGCGCCCGCGG-CGCGg -5'
6592 5' -68.8 NC_001847.1 + 1236 0.67 0.304262
Target:  5'- cCCGCaggccagguacaccGGC-CGCaGCGGcGCGCCGaGCCc -3'
miRNA:   3'- aGGCG--------------CCGcGCG-CGCC-CGCGGCgCGG- -5'
6592 5' -68.8 NC_001847.1 + 1284 0.66 0.34705
Target:  5'- gUUgGCGGCGCGgugGCuGGcCGCCuCGCCc -3'
miRNA:   3'- -AGgCGCCGCGCg--CGcCC-GCGGcGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.