miRNA display CGI


Results 1 - 20 of 1679 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6592 5' -68.8 NC_001847.1 + 61267 1.1 0.000174
Target:  5'- gUCCGCGGCGCGCGCGGGCGCCGCGCCg -3'
miRNA:   3'- -AGGCGCCGCGCGCGCCCGCGGCGCGG- -5'
6592 5' -68.8 NC_001847.1 + 66320 0.82 0.024207
Target:  5'- cUUCGCGGCGCccugcggcgggugggGCGCGGGCGCCGcCGUg -3'
miRNA:   3'- -AGGCGCCGCG---------------CGCGCCCGCGGC-GCGg -5'
6592 5' -68.8 NC_001847.1 + 33205 0.82 0.025851
Target:  5'- cUUgGCGGCGCGgGUGgcucggcuuGGCGCCGCGCCg -3'
miRNA:   3'- -AGgCGCCGCGCgCGC---------CCGCGGCGCGG- -5'
6592 5' -68.8 NC_001847.1 + 24159 0.66 0.371869
Target:  5'- gUCCucgaaCGGCGCGCagccguacucgcacaGCGuGGCGCUGgugGCCa -3'
miRNA:   3'- -AGGc----GCCGCGCG---------------CGC-CCGCGGCg--CGG- -5'
6592 5' -68.8 NC_001847.1 + 106117 0.88 0.00913
Target:  5'- cUCgGCGaGCGCgGCGCGGGCGCCGCuGCCg -3'
miRNA:   3'- -AGgCGC-CGCG-CGCGCCCGCGGCG-CGG- -5'
6592 5' -68.8 NC_001847.1 + 106712 0.87 0.011192
Target:  5'- gCCGCGGCGUagccaGCGCGGGCGCCgguugcGCGCCc -3'
miRNA:   3'- aGGCGCCGCG-----CGCGCCCGCGG------CGCGG- -5'
6592 5' -68.8 NC_001847.1 + 131216 0.86 0.013718
Target:  5'- gCCGCGGCGCcaGCGCGGGCGCgcaaccggcgccCGCGCUg -3'
miRNA:   3'- aGGCGCCGCG--CGCGCCCGCG------------GCGCGG- -5'
6592 5' -68.8 NC_001847.1 + 43126 0.85 0.014433
Target:  5'- cCCGCagacGGCGCGggccCGCGGGCGCUGCGCCc -3'
miRNA:   3'- aGGCG----CCGCGC----GCGCCCGCGGCGCGG- -5'
6592 5' -68.8 NC_001847.1 + 52626 0.83 0.020073
Target:  5'- aCUuCGGCGCGUGCGcGaGCGCCGCGCCa -3'
miRNA:   3'- aGGcGCCGCGCGCGC-C-CGCGGCGCGG- -5'
6592 5' -68.8 NC_001847.1 + 10866 0.82 0.023964
Target:  5'- -gCGCGGCGgGCGCGGGCGCCcaggcagacCGCCu -3'
miRNA:   3'- agGCGCCGCgCGCGCCCGCGGc--------GCGG- -5'
6592 5' -68.8 NC_001847.1 + 18982 0.83 0.022213
Target:  5'- gCCGCGGCGCcCGCGGcCGCCaGCGCCu -3'
miRNA:   3'- aGGCGCCGCGcGCGCCcGCGG-CGCGG- -5'
6592 5' -68.8 NC_001847.1 + 48637 0.83 0.020073
Target:  5'- gCCGCGGCG-GCG-GGGCGCCGcCGCCc -3'
miRNA:   3'- aGGCGCCGCgCGCgCCCGCGGC-GCGG- -5'
6592 5' -68.8 NC_001847.1 + 56831 0.95 0.002421
Target:  5'- cCCGCGGCGCGCGCGccGCGCCGCGCCg -3'
miRNA:   3'- aGGCGCCGCGCGCGCc-CGCGGCGCGG- -5'
6592 5' -68.8 NC_001847.1 + 33493 0.83 0.022213
Target:  5'- gUCCGCGGCgGCgGCGCGGGCGgCggcggGCGCCg -3'
miRNA:   3'- -AGGCGCCG-CG-CGCGCCCGCgG-----CGCGG- -5'
6592 5' -68.8 NC_001847.1 + 13118 0.92 0.004247
Target:  5'- gCCGgGGCGCGCGgGcGGCGCCGCGCCg -3'
miRNA:   3'- aGGCgCCGCGCGCgC-CCGCGGCGCGG- -5'
6592 5' -68.8 NC_001847.1 + 97828 0.84 0.019571
Target:  5'- gCUGUgcucGGCGCGCGCGGGCuGCgCGCGCCu -3'
miRNA:   3'- aGGCG----CCGCGCGCGCCCG-CG-GCGCGG- -5'
6592 5' -68.8 NC_001847.1 + 134120 0.83 0.022782
Target:  5'- gCUGCGGCGCGcCGCGGGCGgCG-GCCu -3'
miRNA:   3'- aGGCGCCGCGC-GCGCCCGCgGCgCGG- -5'
6592 5' -68.8 NC_001847.1 + 68128 0.82 0.024392
Target:  5'- gUCGCGGgcgaGCGCGCGucugccccuucuccGGCGCCGCGCCg -3'
miRNA:   3'- aGGCGCCg---CGCGCGC--------------CCGCGGCGCGG- -5'
6592 5' -68.8 NC_001847.1 + 71925 0.88 0.0089
Target:  5'- -gCGCGGCGCGCGCacgcguaaacGGCGCCGCGCCg -3'
miRNA:   3'- agGCGCCGCGCGCGc---------CCGCGGCGCGG- -5'
6592 5' -68.8 NC_001847.1 + 36353 0.86 0.01208
Target:  5'- gCCGCGGCGCGCGCacgcGGCGCCGCcgcgGCCc -3'
miRNA:   3'- aGGCGCCGCGCGCGc---CCGCGGCG----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.