miRNA display CGI


Results 21 - 40 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6617 3' -55.3 NC_001847.1 + 16458 0.73 0.550721
Target:  5'- -aGCCGGGgcuGCGGCCCGGCCc------ -3'
miRNA:   3'- ccUGGCCC---UGCUGGGCCGGaaauaug -5'
6617 3' -55.3 NC_001847.1 + 119108 0.73 0.570873
Target:  5'- aGAgCGGGuGCG-CCCGGCCgcUGUACu -3'
miRNA:   3'- cCUgGCCC-UGCuGGGCCGGaaAUAUG- -5'
6617 3' -55.3 NC_001847.1 + 128025 0.73 0.581017
Target:  5'- cGGGCCaGGAgGAgCCCGGCCgug--GCg -3'
miRNA:   3'- -CCUGGcCCUgCU-GGGCCGGaaauaUG- -5'
6617 3' -55.3 NC_001847.1 + 16159 0.72 0.610618
Target:  5'- aGGCCGGGGCGACCgccccguUGGCCg------ -3'
miRNA:   3'- cCUGGCCCUGCUGG-------GCCGGaaauaug -5'
6617 3' -55.3 NC_001847.1 + 66265 0.72 0.632149
Target:  5'- uGGGCCGGGGaggccucuuCGGCCCGGCg------- -3'
miRNA:   3'- -CCUGGCCCU---------GCUGGGCCGgaaauaug -5'
6617 3' -55.3 NC_001847.1 + 81496 0.72 0.632149
Target:  5'- cGGcCCGGGu--GCCCGGUCUUUGUcGCg -3'
miRNA:   3'- -CCuGGCCCugcUGGGCCGGAAAUA-UG- -5'
6617 3' -55.3 NC_001847.1 + 116090 0.72 0.632149
Target:  5'- cGACUGGGACGacgaugacgacGCCgGGCCUgccgGCg -3'
miRNA:   3'- cCUGGCCCUGC-----------UGGgCCGGAaauaUG- -5'
6617 3' -55.3 NC_001847.1 + 105371 0.72 0.632149
Target:  5'- cGGGCCGGGGCGGCCCucuuCCUc----- -3'
miRNA:   3'- -CCUGGCCCUGCUGGGcc--GGAaauaug -5'
6617 3' -55.3 NC_001847.1 + 2558 0.72 0.632149
Target:  5'- cGGGCCGGGGCGGCCCucuuCCUc----- -3'
miRNA:   3'- -CCUGGCCCUGCUGGGcc--GGAaauaug -5'
6617 3' -55.3 NC_001847.1 + 12962 0.72 0.642405
Target:  5'- cGGGCCGGGgguGGCCCGGUCg------ -3'
miRNA:   3'- -CCUGGCCCug-CUGGGCCGGaaauaug -5'
6617 3' -55.3 NC_001847.1 + 10540 0.72 0.652654
Target:  5'- cGGGCCcgGGGACccgcGCCCGGCCg----GCg -3'
miRNA:   3'- -CCUGG--CCCUGc---UGGGCCGGaaauaUG- -5'
6617 3' -55.3 NC_001847.1 + 113353 0.72 0.652654
Target:  5'- cGGGCCcgGGGACccgcGCCCGGCCg----GCg -3'
miRNA:   3'- -CCUGG--CCCUGc---UGGGCCGGaaauaUG- -5'
6617 3' -55.3 NC_001847.1 + 44265 0.72 0.652654
Target:  5'- cGACUGGGcaACGGCCCcGGCCUcg--ACa -3'
miRNA:   3'- cCUGGCCC--UGCUGGG-CCGGAaauaUG- -5'
6617 3' -55.3 NC_001847.1 + 72319 0.71 0.682253
Target:  5'- gGGGCUGcGGcagcugcGCGACUCGGCCcggcUUGUGCg -3'
miRNA:   3'- -CCUGGC-CC-------UGCUGGGCCGGa---AAUAUG- -5'
6617 3' -55.3 NC_001847.1 + 132693 0.71 0.697439
Target:  5'- gGGACgGGGACGGCgaggcggcggcccugCCGGCCg------ -3'
miRNA:   3'- -CCUGgCCCUGCUG---------------GGCCGGaaauaug -5'
6617 3' -55.3 NC_001847.1 + 29880 0.71 0.697439
Target:  5'- gGGACgGGGACGGCgaggcggcggcccugCCGGCCg------ -3'
miRNA:   3'- -CCUGgCCCUGCUG---------------GGCCGGaaauaug -5'
6617 3' -55.3 NC_001847.1 + 113415 0.71 0.70348
Target:  5'- cGGGCCGGcGcCGGCCCGcGCCcugcugGCg -3'
miRNA:   3'- -CCUGGCC-CuGCUGGGC-CGGaaaua-UG- -5'
6617 3' -55.3 NC_001847.1 + 10602 0.71 0.70348
Target:  5'- cGGGCCGGcGcCGGCCCGcGCCcugcugGCg -3'
miRNA:   3'- -CCUGGCC-CuGCUGGGC-CGGaaaua-UG- -5'
6617 3' -55.3 NC_001847.1 + 102086 0.71 0.70348
Target:  5'- cGGGCCGcGcGCGACCCGGUCa------ -3'
miRNA:   3'- -CCUGGC-CcUGCUGGGCCGGaaauaug -5'
6617 3' -55.3 NC_001847.1 + 118903 0.71 0.70348
Target:  5'- gGGGCCGGGGCcggGGCCgaGGCCggg--ACg -3'
miRNA:   3'- -CCUGGCCCUG---CUGGg-CCGGaaauaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.