Results 21 - 40 of 193 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6617 | 3' | -55.3 | NC_001847.1 | + | 113415 | 0.71 | 0.70348 |
Target: 5'- cGGGCCGGcGcCGGCCCGcGCCcugcugGCg -3' miRNA: 3'- -CCUGGCC-CuGCUGGGC-CGGaaaua-UG- -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 113353 | 0.72 | 0.652654 |
Target: 5'- cGGGCCcgGGGACccgcGCCCGGCCg----GCg -3' miRNA: 3'- -CCUGG--CCCUGc---UGGGCCGGaaauaUG- -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 77816 | 0.74 | 0.520926 |
Target: 5'- uGGCgCGGcGCGugCCGGCCUUUuUGCg -3' miRNA: 3'- cCUG-GCCcUGCugGGCCGGAAAuAUG- -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 133477 | 0.77 | 0.383906 |
Target: 5'- uGGCCGcGcGACGGCCCGGCCgucggGCa -3' miRNA: 3'- cCUGGC-C-CUGCUGGGCCGGaaauaUG- -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 134384 | 0.69 | 0.790372 |
Target: 5'- -cGCCGGcGGCGGgCCGGCCUc----- -3' miRNA: 3'- ccUGGCC-CUGCUgGGCCGGAaauaug -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 66065 | 0.7 | 0.743104 |
Target: 5'- cGGcGCCgGGGGCGACgCGGgCUUUGaGCu -3' miRNA: 3'- -CC-UGG-CCCUGCUGgGCCgGAAAUaUG- -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 116090 | 0.72 | 0.632149 |
Target: 5'- cGACUGGGACGacgaugacgacGCCgGGCCUgccgGCg -3' miRNA: 3'- cCUGGCCCUGC-----------UGGgCCGGAaauaUG- -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 73353 | 0.77 | 0.375645 |
Target: 5'- uGGCCaGGGCGACCCGGCCc------ -3' miRNA: 3'- cCUGGcCCUGCUGGGCCGGaaauaug -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 129337 | 0.7 | 0.743104 |
Target: 5'- gGGGCCGGGGgcguuCGGCCauGCUUUcAUGCa -3' miRNA: 3'- -CCUGGCCCU-----GCUGGgcCGGAAaUAUG- -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 93762 | 0.77 | 0.351592 |
Target: 5'- cGGcuGCCGGcGGCGGCCCGGCCg------ -3' miRNA: 3'- -CC--UGGCC-CUGCUGGGCCGGaaauaug -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 44265 | 0.72 | 0.652654 |
Target: 5'- cGACUGGGcaACGGCCCcGGCCUcg--ACa -3' miRNA: 3'- cCUGGCCC--UGCUGGG-CCGGAaauaUG- -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 52446 | 0.7 | 0.72345 |
Target: 5'- uGGACCuGGACGACUgggCGGCCcugGUGg -3' miRNA: 3'- -CCUGGcCCUGCUGG---GCCGGaaaUAUg -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 66265 | 0.72 | 0.632149 |
Target: 5'- uGGGCCGGGGaggccucuuCGGCCCGGCg------- -3' miRNA: 3'- -CCUGGCCCU---------GCUGGGCCGgaaauaug -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 72405 | 0.74 | 0.530793 |
Target: 5'- cGGGCCccgacgcgGGGACGGCCaCGGCCgcaacGCg -3' miRNA: 3'- -CCUGG--------CCCUGCUGG-GCCGGaaauaUG- -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 48156 | 0.74 | 0.511133 |
Target: 5'- cGGGCCGGcGcgcgcCGGCCCGGCCggcg-GCg -3' miRNA: 3'- -CCUGGCC-Cu----GCUGGGCCGGaaauaUG- -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 108500 | 0.75 | 0.454148 |
Target: 5'- cGGCCGGGGCcgcccaGACCCGGCaguucagGUGCg -3' miRNA: 3'- cCUGGCCCUG------CUGGGCCGgaaa---UAUG- -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 48829 | 0.69 | 0.817088 |
Target: 5'- cGGGCCuugccgcgcgGGGGCGcCUCGGCCgcgcgGCg -3' miRNA: 3'- -CCUGG----------CCCUGCuGGGCCGGaaauaUG- -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 135032 | 0.69 | 0.799432 |
Target: 5'- gGGGCCGGGGCGcgggGCgCCGGaCCcagggGCg -3' miRNA: 3'- -CCUGGCCCUGC----UG-GGCC-GGaaauaUG- -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 69786 | 0.69 | 0.781169 |
Target: 5'- aGGugCGaucGGACGACaaCGGCCU--GUACg -3' miRNA: 3'- -CCugGC---CCUGCUGg-GCCGGAaaUAUG- -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 130804 | 0.7 | 0.743104 |
Target: 5'- cGGCCGGGGCGgaggcgGCCgCGGCCg------ -3' miRNA: 3'- cCUGGCCCUGC------UGG-GCCGGaaauaug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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