Results 21 - 40 of 193 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6617 | 3' | -55.3 | NC_001847.1 | + | 16458 | 0.73 | 0.550721 |
Target: 5'- -aGCCGGGgcuGCGGCCCGGCCc------ -3' miRNA: 3'- ccUGGCCC---UGCUGGGCCGGaaauaug -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 119108 | 0.73 | 0.570873 |
Target: 5'- aGAgCGGGuGCG-CCCGGCCgcUGUACu -3' miRNA: 3'- cCUgGCCC-UGCuGGGCCGGaaAUAUG- -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 128025 | 0.73 | 0.581017 |
Target: 5'- cGGGCCaGGAgGAgCCCGGCCgug--GCg -3' miRNA: 3'- -CCUGGcCCUgCU-GGGCCGGaaauaUG- -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 16159 | 0.72 | 0.610618 |
Target: 5'- aGGCCGGGGCGACCgccccguUGGCCg------ -3' miRNA: 3'- cCUGGCCCUGCUGG-------GCCGGaaauaug -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 66265 | 0.72 | 0.632149 |
Target: 5'- uGGGCCGGGGaggccucuuCGGCCCGGCg------- -3' miRNA: 3'- -CCUGGCCCU---------GCUGGGCCGgaaauaug -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 81496 | 0.72 | 0.632149 |
Target: 5'- cGGcCCGGGu--GCCCGGUCUUUGUcGCg -3' miRNA: 3'- -CCuGGCCCugcUGGGCCGGAAAUA-UG- -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 116090 | 0.72 | 0.632149 |
Target: 5'- cGACUGGGACGacgaugacgacGCCgGGCCUgccgGCg -3' miRNA: 3'- cCUGGCCCUGC-----------UGGgCCGGAaauaUG- -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 105371 | 0.72 | 0.632149 |
Target: 5'- cGGGCCGGGGCGGCCCucuuCCUc----- -3' miRNA: 3'- -CCUGGCCCUGCUGGGcc--GGAaauaug -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 2558 | 0.72 | 0.632149 |
Target: 5'- cGGGCCGGGGCGGCCCucuuCCUc----- -3' miRNA: 3'- -CCUGGCCCUGCUGGGcc--GGAaauaug -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 12962 | 0.72 | 0.642405 |
Target: 5'- cGGGCCGGGgguGGCCCGGUCg------ -3' miRNA: 3'- -CCUGGCCCug-CUGGGCCGGaaauaug -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 10540 | 0.72 | 0.652654 |
Target: 5'- cGGGCCcgGGGACccgcGCCCGGCCg----GCg -3' miRNA: 3'- -CCUGG--CCCUGc---UGGGCCGGaaauaUG- -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 113353 | 0.72 | 0.652654 |
Target: 5'- cGGGCCcgGGGACccgcGCCCGGCCg----GCg -3' miRNA: 3'- -CCUGG--CCCUGc---UGGGCCGGaaauaUG- -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 44265 | 0.72 | 0.652654 |
Target: 5'- cGACUGGGcaACGGCCCcGGCCUcg--ACa -3' miRNA: 3'- cCUGGCCC--UGCUGGG-CCGGAaauaUG- -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 72319 | 0.71 | 0.682253 |
Target: 5'- gGGGCUGcGGcagcugcGCGACUCGGCCcggcUUGUGCg -3' miRNA: 3'- -CCUGGC-CC-------UGCUGGGCCGGa---AAUAUG- -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 132693 | 0.71 | 0.697439 |
Target: 5'- gGGACgGGGACGGCgaggcggcggcccugCCGGCCg------ -3' miRNA: 3'- -CCUGgCCCUGCUG---------------GGCCGGaaauaug -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 29880 | 0.71 | 0.697439 |
Target: 5'- gGGACgGGGACGGCgaggcggcggcccugCCGGCCg------ -3' miRNA: 3'- -CCUGgCCCUGCUG---------------GGCCGGaaauaug -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 113415 | 0.71 | 0.70348 |
Target: 5'- cGGGCCGGcGcCGGCCCGcGCCcugcugGCg -3' miRNA: 3'- -CCUGGCC-CuGCUGGGC-CGGaaaua-UG- -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 10602 | 0.71 | 0.70348 |
Target: 5'- cGGGCCGGcGcCGGCCCGcGCCcugcugGCg -3' miRNA: 3'- -CCUGGCC-CuGCUGGGC-CGGaaaua-UG- -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 102086 | 0.71 | 0.70348 |
Target: 5'- cGGGCCGcGcGCGACCCGGUCa------ -3' miRNA: 3'- -CCUGGC-CcUGCUGGGCCGGaaauaug -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 118903 | 0.71 | 0.70348 |
Target: 5'- gGGGCCGGGGCcggGGCCgaGGCCggg--ACg -3' miRNA: 3'- -CCUGGCCCUG---CUGGg-CCGGaaauaUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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