Results 1 - 20 of 193 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6617 | 3' | -55.3 | NC_001847.1 | + | 80777 | 1.13 | 0.001883 |
Target: 5'- cGGACCGGGACGACCCGGCCUUUAUACa -3' miRNA: 3'- -CCUGGCCCUGCUGGGCCGGAAAUAUG- -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 93762 | 0.77 | 0.351592 |
Target: 5'- cGGcuGCCGGcGGCGGCCCGGCCg------ -3' miRNA: 3'- -CC--UGGCC-CUGCUGGGCCGGaaauaug -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 73353 | 0.77 | 0.375645 |
Target: 5'- uGGCCaGGGCGACCCGGCCc------ -3' miRNA: 3'- cCUGGcCCUGCUGGGCCGGaaauaug -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 30664 | 0.77 | 0.383906 |
Target: 5'- uGGCCGcGcGACGGCCCGGCCgucggGCa -3' miRNA: 3'- cCUGGC-C-CUGCUGGGCCGGaaauaUG- -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 133477 | 0.77 | 0.383906 |
Target: 5'- uGGCCGcGcGACGGCCCGGCCgucggGCa -3' miRNA: 3'- cCUGGC-C-CUGCUGGGCCGGaaauaUG- -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 110404 | 0.76 | 0.400786 |
Target: 5'- -aGCCGGcugcACGGCCCGGCCUUUAcgGCc -3' miRNA: 3'- ccUGGCCc---UGCUGGGCCGGAAAUa-UG- -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 5687 | 0.75 | 0.454148 |
Target: 5'- cGGCCGGGGCcgcccaGACCCGGCaguucagGUGCg -3' miRNA: 3'- cCUGGCCCUG------CUGGGCCGgaaa---UAUG- -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 108500 | 0.75 | 0.454148 |
Target: 5'- cGGCCGGGGCcgcccaGACCCGGCaguucagGUGCg -3' miRNA: 3'- cCUGGCCCUG------CUGGGCCGgaaa---UAUG- -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 77462 | 0.75 | 0.472776 |
Target: 5'- cGGGCUGGGGCGggcgccgggcGCCCGGCCc------ -3' miRNA: 3'- -CCUGGCCCUGC----------UGGGCCGGaaauaug -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 33060 | 0.75 | 0.472776 |
Target: 5'- uGACCGGGucgcgcGCGGCCCGcGCCUgcccuUGCu -3' miRNA: 3'- cCUGGCCC------UGCUGGGC-CGGAaau--AUG- -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 118688 | 0.75 | 0.482234 |
Target: 5'- uGGGCCGGGcCGcagcCCCGGCUgggUAUAUa -3' miRNA: 3'- -CCUGGCCCuGCu---GGGCCGGaa-AUAUG- -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 48156 | 0.74 | 0.511133 |
Target: 5'- cGGGCCGGcGcgcgcCGGCCCGGCCggcg-GCg -3' miRNA: 3'- -CCUGGCC-Cu----GCUGGGCCGGaaauaUG- -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 12738 | 0.74 | 0.520926 |
Target: 5'- aGGGCCGGGuGCGGCCCaGcGCCUUc---- -3' miRNA: 3'- -CCUGGCCC-UGCUGGG-C-CGGAAauaug -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 111285 | 0.74 | 0.520926 |
Target: 5'- cGGGCCgGGGGCGgcGCUCGGCCgggg-GCg -3' miRNA: 3'- -CCUGG-CCCUGC--UGGGCCGGaaauaUG- -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 77816 | 0.74 | 0.520926 |
Target: 5'- uGGCgCGGcGCGugCCGGCCUUUuUGCg -3' miRNA: 3'- cCUG-GCCcUGCugGGCCGGAAAuAUG- -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 8472 | 0.74 | 0.520926 |
Target: 5'- cGGGCCgGGGGCGgcGCUCGGCCgggg-GCg -3' miRNA: 3'- -CCUGG-CCCUGC--UGGGCCGGaaauaUG- -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 72405 | 0.74 | 0.530793 |
Target: 5'- cGGGCCccgacgcgGGGACGGCCaCGGCCgcaacGCg -3' miRNA: 3'- -CCUGG--------CCCUGCUGG-GCCGGaaauaUG- -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 46034 | 0.74 | 0.530793 |
Target: 5'- -cACCGGGGCGGCgCuGCCUUcUGUGCg -3' miRNA: 3'- ccUGGCCCUGCUGgGcCGGAA-AUAUG- -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 128680 | 0.74 | 0.530793 |
Target: 5'- cGugCGGGACuGCCUGGCCac-GUACg -3' miRNA: 3'- cCugGCCCUGcUGGGCCGGaaaUAUG- -5' |
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6617 | 3' | -55.3 | NC_001847.1 | + | 61795 | 0.74 | 0.540726 |
Target: 5'- uGGGCCGGGuCGcCCUGGCCa------ -3' miRNA: 3'- -CCUGGCCCuGCuGGGCCGGaaauaug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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