miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6617 3' -55.3 NC_001847.1 + 80777 1.13 0.001883
Target:  5'- cGGACCGGGACGACCCGGCCUUUAUACa -3'
miRNA:   3'- -CCUGGCCCUGCUGGGCCGGAAAUAUG- -5'
6617 3' -55.3 NC_001847.1 + 116090 0.72 0.632149
Target:  5'- cGACUGGGACGacgaugacgacGCCgGGCCUgccgGCg -3'
miRNA:   3'- cCUGGCCCUGC-----------UGGgCCGGAaauaUG- -5'
6617 3' -55.3 NC_001847.1 + 113353 0.72 0.652654
Target:  5'- cGGGCCcgGGGACccgcGCCCGGCCg----GCg -3'
miRNA:   3'- -CCUGG--CCCUGc---UGGGCCGGaaauaUG- -5'
6617 3' -55.3 NC_001847.1 + 90379 0.66 0.934716
Target:  5'- uGGACgCGGaccACGGCCCccGGCCguacGUGCu -3'
miRNA:   3'- -CCUG-GCCc--UGCUGGG--CCGGaaa-UAUG- -5'
6617 3' -55.3 NC_001847.1 + 108500 0.75 0.454148
Target:  5'- cGGCCGGGGCcgcccaGACCCGGCaguucagGUGCg -3'
miRNA:   3'- cCUGGCCCUG------CUGGGCCGgaaa---UAUG- -5'
6617 3' -55.3 NC_001847.1 + 77462 0.75 0.472776
Target:  5'- cGGGCUGGGGCGggcgccgggcGCCCGGCCc------ -3'
miRNA:   3'- -CCUGGCCCUGC----------UGGGCCGGaaauaug -5'
6617 3' -55.3 NC_001847.1 + 48156 0.74 0.511133
Target:  5'- cGGGCCGGcGcgcgcCGGCCCGGCCggcg-GCg -3'
miRNA:   3'- -CCUGGCC-Cu----GCUGGGCCGGaaauaUG- -5'
6617 3' -55.3 NC_001847.1 + 12738 0.74 0.520926
Target:  5'- aGGGCCGGGuGCGGCCCaGcGCCUUc---- -3'
miRNA:   3'- -CCUGGCCC-UGCUGGG-C-CGGAAauaug -5'
6617 3' -55.3 NC_001847.1 + 72405 0.74 0.530793
Target:  5'- cGGGCCccgacgcgGGGACGGCCaCGGCCgcaacGCg -3'
miRNA:   3'- -CCUGG--------CCCUGCUGG-GCCGGaaauaUG- -5'
6617 3' -55.3 NC_001847.1 + 105371 0.72 0.632149
Target:  5'- cGGGCCGGGGCGGCCCucuuCCUc----- -3'
miRNA:   3'- -CCUGGCCCUGCUGGGcc--GGAaauaug -5'
6617 3' -55.3 NC_001847.1 + 16159 0.72 0.610618
Target:  5'- aGGCCGGGGCGACCgccccguUGGCCg------ -3'
miRNA:   3'- cCUGGCCCUGCUGG-------GCCGGaaauaug -5'
6617 3' -55.3 NC_001847.1 + 77816 0.74 0.520926
Target:  5'- uGGCgCGGcGCGugCCGGCCUUUuUGCg -3'
miRNA:   3'- cCUG-GCCcUGCugGGCCGGAAAuAUG- -5'
6617 3' -55.3 NC_001847.1 + 93762 0.77 0.351592
Target:  5'- cGGcuGCCGGcGGCGGCCCGGCCg------ -3'
miRNA:   3'- -CC--UGGCC-CUGCUGGGCCGGaaauaug -5'
6617 3' -55.3 NC_001847.1 + 66265 0.72 0.632149
Target:  5'- uGGGCCGGGGaggccucuuCGGCCCGGCg------- -3'
miRNA:   3'- -CCUGGCCCU---------GCUGGGCCGgaaauaug -5'
6617 3' -55.3 NC_001847.1 + 73353 0.77 0.375645
Target:  5'- uGGCCaGGGCGACCCGGCCc------ -3'
miRNA:   3'- cCUGGcCCUGCUGGGCCGGaaauaug -5'
6617 3' -55.3 NC_001847.1 + 111285 0.74 0.520926
Target:  5'- cGGGCCgGGGGCGgcGCUCGGCCgggg-GCg -3'
miRNA:   3'- -CCUGG-CCCUGC--UGGGCCGGaaauaUG- -5'
6617 3' -55.3 NC_001847.1 + 81496 0.72 0.632149
Target:  5'- cGGcCCGGGu--GCCCGGUCUUUGUcGCg -3'
miRNA:   3'- -CCuGGCCCugcUGGGCCGGAAAUA-UG- -5'
6617 3' -55.3 NC_001847.1 + 44265 0.72 0.652654
Target:  5'- cGACUGGGcaACGGCCCcGGCCUcg--ACa -3'
miRNA:   3'- cCUGGCCC--UGCUGGG-CCGGAaauaUG- -5'
6617 3' -55.3 NC_001847.1 + 133477 0.77 0.383906
Target:  5'- uGGCCGcGcGACGGCCCGGCCgucggGCa -3'
miRNA:   3'- cCUGGC-C-CUGCUGGGCCGGaaauaUG- -5'
6617 3' -55.3 NC_001847.1 + 118688 0.75 0.482234
Target:  5'- uGGGCCGGGcCGcagcCCCGGCUgggUAUAUa -3'
miRNA:   3'- -CCUGGCCCuGCu---GGGCCGGaa-AUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.