miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6617 3' -55.3 NC_001847.1 + 90379 0.66 0.934716
Target:  5'- uGGACgCGGaccACGGCCCccGGCCguacGUGCu -3'
miRNA:   3'- -CCUG-GCCc--UGCUGGG--CCGGaaa-UAUG- -5'
6617 3' -55.3 NC_001847.1 + 79545 0.66 0.9243
Target:  5'- gGGGCCGGGGgGGCUgGGgCUc----- -3'
miRNA:   3'- -CCUGGCCCUgCUGGgCCgGAaauaug -5'
6617 3' -55.3 NC_001847.1 + 61036 0.66 0.918732
Target:  5'- cGGCCGGGAa---CCGGCagcgGUACg -3'
miRNA:   3'- cCUGGCCCUgcugGGCCGgaaaUAUG- -5'
6617 3' -55.3 NC_001847.1 + 95746 0.66 0.918732
Target:  5'- cGGGCCgcucuggcgcggGGGGCGGCgCgGGCCgcucugGCg -3'
miRNA:   3'- -CCUGG------------CCCUGCUG-GgCCGGaaaua-UG- -5'
6617 3' -55.3 NC_001847.1 + 95692 0.66 0.918732
Target:  5'- cGGGCCgcucuggcgcggGGGGCGGCgCgGGCCgcucugGCg -3'
miRNA:   3'- -CCUGG------------CCCUGCUG-GgCCGGaaaua-UG- -5'
6617 3' -55.3 NC_001847.1 + 95638 0.66 0.918732
Target:  5'- cGGGCCgcucuggcgcggGGGGCGGCgCgGGCCgcucugGCg -3'
miRNA:   3'- -CCUGG------------CCCUGCUG-GgCCGGaaaua-UG- -5'
6617 3' -55.3 NC_001847.1 + 90861 0.66 0.918732
Target:  5'- gGGGCCGGGGCuggugucgaGGCCgGgGCCgu--UGCc -3'
miRNA:   3'- -CCUGGCCCUG---------CUGGgC-CGGaaauAUG- -5'
6617 3' -55.3 NC_001847.1 + 56836 0.66 0.912924
Target:  5'- gGGGagGGGGCGGCCCaGCCg------ -3'
miRNA:   3'- -CCUggCCCUGCUGGGcCGGaaauaug -5'
6617 3' -55.3 NC_001847.1 + 120283 0.66 0.906878
Target:  5'- cGACCauGGGGuCG-CCCGGCCgcauguaAUACa -3'
miRNA:   3'- cCUGG--CCCU-GCuGGGCCGGaaa----UAUG- -5'
6617 3' -55.3 NC_001847.1 + 124859 0.66 0.9243
Target:  5'- uGACUGGcGagcgcGCGGCCCgcGGUUUUUAUGCg -3'
miRNA:   3'- cCUGGCC-C-----UGCUGGG--CCGGAAAUAUG- -5'
6617 3' -55.3 NC_001847.1 + 116167 0.66 0.9243
Target:  5'- cGGCCGcGGGCG-CCgCGGCCg------ -3'
miRNA:   3'- cCUGGC-CCUGCuGG-GCCGGaaauaug -5'
6617 3' -55.3 NC_001847.1 + 23067 0.66 0.929628
Target:  5'- uGGGCUgGGGugGGCUgGGCUgggGUGg -3'
miRNA:   3'- -CCUGG-CCCugCUGGgCCGGaaaUAUg -5'
6617 3' -55.3 NC_001847.1 + 37149 0.66 0.934716
Target:  5'- cGGGCCuuuGGGGCGGCCgggaagCGGCaccucGUGCu -3'
miRNA:   3'- -CCUGG---CCCUGCUGG------GCCGgaaa-UAUG- -5'
6617 3' -55.3 NC_001847.1 + 8601 0.66 0.934716
Target:  5'- -cGCCaGGGGCGgcGCUCGGCCgggg-GCg -3'
miRNA:   3'- ccUGG-CCCUGC--UGGGCCGGaaauaUG- -5'
6617 3' -55.3 NC_001847.1 + 40804 0.66 0.929628
Target:  5'- cGACCGcggugaGGAUGugCCGGCCc------ -3'
miRNA:   3'- cCUGGC------CCUGCugGGCCGGaaauaug -5'
6617 3' -55.3 NC_001847.1 + 34087 0.66 0.929628
Target:  5'- cGGccCCGGGGcCGGCCuCGGCgg--GUGCg -3'
miRNA:   3'- -CCu-GGCCCU-GCUGG-GCCGgaaaUAUG- -5'
6617 3' -55.3 NC_001847.1 + 118863 0.66 0.929628
Target:  5'- aGACCGGGuuGgauuACCCGGgCgcucgGUGCa -3'
miRNA:   3'- cCUGGCCCugC----UGGGCCgGaaa--UAUG- -5'
6617 3' -55.3 NC_001847.1 + 107252 0.66 0.929628
Target:  5'- cGGCCGGGccgGCGACCUcGCCa------ -3'
miRNA:   3'- cCUGGCCC---UGCUGGGcCGGaaauaug -5'
6617 3' -55.3 NC_001847.1 + 66731 0.66 0.929628
Target:  5'- -uGCCGGuuGGCGACCCuuaccuGGCCga-GUGCu -3'
miRNA:   3'- ccUGGCC--CUGCUGGG------CCGGaaaUAUG- -5'
6617 3' -55.3 NC_001847.1 + 23097 0.66 0.929628
Target:  5'- uGGGCUgGGGugGGCUgGGCUgggGUGg -3'
miRNA:   3'- -CCUGG-CCCugCUGGgCCGGaaaUAUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.