miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6617 3' -55.3 NC_001847.1 + 765 0.67 0.887336
Target:  5'- aGGCCGGcccgccgccGGCGGCgCCGGCCUc----- -3'
miRNA:   3'- cCUGGCC---------CUGCUG-GGCCGGAaauaug -5'
6617 3' -55.3 NC_001847.1 + 893 0.68 0.842286
Target:  5'- -cGCCGGGGCcGCCgCGGCCgccg-GCc -3'
miRNA:   3'- ccUGGCCCUGcUGG-GCCGGaaauaUG- -5'
6617 3' -55.3 NC_001847.1 + 2352 0.67 0.887336
Target:  5'- -cGCCGcGcCGGCCCGGCCgcgUcgGCg -3'
miRNA:   3'- ccUGGCcCuGCUGGGCCGGaa-AuaUG- -5'
6617 3' -55.3 NC_001847.1 + 2558 0.72 0.632149
Target:  5'- cGGGCCGGGGCGGCCCucuuCCUc----- -3'
miRNA:   3'- -CCUGGCCCUGCUGGGcc--GGAaauaug -5'
6617 3' -55.3 NC_001847.1 + 3526 0.67 0.894081
Target:  5'- cGGGCCGuGGcCGACUaCGGCCgcga-GCg -3'
miRNA:   3'- -CCUGGC-CCuGCUGG-GCCGGaaauaUG- -5'
6617 3' -55.3 NC_001847.1 + 3987 0.69 0.80834
Target:  5'- gGGGCCGGGcgcGCGGCCCcgcggggcgccgGGCCcg---GCg -3'
miRNA:   3'- -CCUGGCCC---UGCUGGG------------CCGGaaauaUG- -5'
6617 3' -55.3 NC_001847.1 + 4769 0.7 0.72345
Target:  5'- -uGCCGGGcgACGACaugaCCGGCCguggGUGCg -3'
miRNA:   3'- ccUGGCCC--UGCUG----GGCCGGaaa-UAUG- -5'
6617 3' -55.3 NC_001847.1 + 5687 0.75 0.454148
Target:  5'- cGGCCGGGGCcgcccaGACCCGGCaguucagGUGCg -3'
miRNA:   3'- cCUGGCCCUG------CUGGGCCGgaaa---UAUG- -5'
6617 3' -55.3 NC_001847.1 + 6297 0.66 0.929628
Target:  5'- cGGACCucGGCGAggUCGGCCUcgAUGCg -3'
miRNA:   3'- -CCUGGccCUGCUg-GGCCGGAaaUAUG- -5'
6617 3' -55.3 NC_001847.1 + 8472 0.74 0.520926
Target:  5'- cGGGCCgGGGGCGgcGCUCGGCCgggg-GCg -3'
miRNA:   3'- -CCUGG-CCCUGC--UGGGCCGGaaauaUG- -5'
6617 3' -55.3 NC_001847.1 + 8601 0.66 0.934716
Target:  5'- -cGCCaGGGGCGgcGCUCGGCCgggg-GCg -3'
miRNA:   3'- ccUGG-CCCUGC--UGGGCCGGaaauaUG- -5'
6617 3' -55.3 NC_001847.1 + 10540 0.72 0.652654
Target:  5'- cGGGCCcgGGGACccgcGCCCGGCCg----GCg -3'
miRNA:   3'- -CCUGG--CCCUGc---UGGGCCGGaaauaUG- -5'
6617 3' -55.3 NC_001847.1 + 10602 0.71 0.70348
Target:  5'- cGGGCCGGcGcCGGCCCGcGCCcugcugGCg -3'
miRNA:   3'- -CCUGGCC-CuGCUGGGC-CGGaaaua-UG- -5'
6617 3' -55.3 NC_001847.1 + 10699 0.67 0.900596
Target:  5'- cGcCCGGGcGCGGCCCGcGCCg------ -3'
miRNA:   3'- cCuGGCCC-UGCUGGGC-CGGaaauaug -5'
6617 3' -55.3 NC_001847.1 + 10940 0.66 0.918732
Target:  5'- cGGCUGGcGCGG-CUGGCCUUUGcGCa -3'
miRNA:   3'- cCUGGCCcUGCUgGGCCGGAAAUaUG- -5'
6617 3' -55.3 NC_001847.1 + 12365 0.66 0.923754
Target:  5'- -cACCGGaGccugcuggagcgcACGGCCCGGaCCgugUAUGCg -3'
miRNA:   3'- ccUGGCC-C-------------UGCUGGGCC-GGaa-AUAUG- -5'
6617 3' -55.3 NC_001847.1 + 12738 0.74 0.520926
Target:  5'- aGGGCCGGGuGCGGCCCaGcGCCUUc---- -3'
miRNA:   3'- -CCUGGCCC-UGCUGGG-C-CGGAAauaug -5'
6617 3' -55.3 NC_001847.1 + 12962 0.72 0.642405
Target:  5'- cGGGCCGGGgguGGCCCGGUCg------ -3'
miRNA:   3'- -CCUGGCCCug-CUGGGCCGGaaauaug -5'
6617 3' -55.3 NC_001847.1 + 13550 0.66 0.906878
Target:  5'- -cGCCGGGGCGGCgCGGUgggu-UGCa -3'
miRNA:   3'- ccUGGCCCUGCUGgGCCGgaaauAUG- -5'
6617 3' -55.3 NC_001847.1 + 13708 0.68 0.842286
Target:  5'- -cGCCGGGACGugCggcagaugacagCGGCCUUccuggGCg -3'
miRNA:   3'- ccUGGCCCUGCugG------------GCCGGAAaua--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.