miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6617 3' -55.3 NC_001847.1 + 135032 0.69 0.799432
Target:  5'- gGGGCCGGGGCGcgggGCgCCGGaCCcagggGCg -3'
miRNA:   3'- -CCUGGCCCUGC----UG-GGCC-GGaaauaUG- -5'
6617 3' -55.3 NC_001847.1 + 134636 0.68 0.858138
Target:  5'- uGGGCUgGGGGCGGgCCGGCagcag-GCg -3'
miRNA:   3'- -CCUGG-CCCUGCUgGGCCGgaaauaUG- -5'
6617 3' -55.3 NC_001847.1 + 134384 0.69 0.790372
Target:  5'- -cGCCGGcGGCGGgCCGGCCUc----- -3'
miRNA:   3'- ccUGGCC-CUGCUgGGCCGGAaauaug -5'
6617 3' -55.3 NC_001847.1 + 134077 0.67 0.87317
Target:  5'- uGGACUGGGACGcggACCagGGCCc------ -3'
miRNA:   3'- -CCUGGCCCUGC---UGGg-CCGGaaauaug -5'
6617 3' -55.3 NC_001847.1 + 133477 0.77 0.383906
Target:  5'- uGGCCGcGcGACGGCCCGGCCgucggGCa -3'
miRNA:   3'- cCUGGC-C-CUGCUGGGCCGGaaauaUG- -5'
6617 3' -55.3 NC_001847.1 + 132693 0.71 0.697439
Target:  5'- gGGACgGGGACGGCgaggcggcggcccugCCGGCCg------ -3'
miRNA:   3'- -CCUGgCCCUGCUG---------------GGCCGGaaauaug -5'
6617 3' -55.3 NC_001847.1 + 132449 0.68 0.842286
Target:  5'- aGGGCCGGGGCG-CCgCGGgCg------ -3'
miRNA:   3'- -CCUGGCCCUGCuGG-GCCgGaaauaug -5'
6617 3' -55.3 NC_001847.1 + 132045 0.68 0.842286
Target:  5'- cGGGCCGcGGccugcCGGCCgCGGCCUgc--GCg -3'
miRNA:   3'- -CCUGGC-CCu----GCUGG-GCCGGAaauaUG- -5'
6617 3' -55.3 NC_001847.1 + 130804 0.7 0.743104
Target:  5'- cGGCCGGGGCGgaggcgGCCgCGGCCg------ -3'
miRNA:   3'- cCUGGCCCUGC------UGG-GCCGGaaauaug -5'
6617 3' -55.3 NC_001847.1 + 130445 0.67 0.900596
Target:  5'- cGGACCucggcccgacggGGGGCucggaggaaGACCCGGCCc---UGCu -3'
miRNA:   3'- -CCUGG------------CCCUG---------CUGGGCCGGaaauAUG- -5'
6617 3' -55.3 NC_001847.1 + 130178 0.69 0.80834
Target:  5'- cGACCccgcGGGCG-CCCGGCCUgaagagACg -3'
miRNA:   3'- cCUGGc---CCUGCuGGGCCGGAaaua--UG- -5'
6617 3' -55.3 NC_001847.1 + 129775 0.68 0.834068
Target:  5'- cGGACCGccGGAgccugGGCCCGGCCgcgccGCg -3'
miRNA:   3'- -CCUGGC--CCUg----CUGGGCCGGaaauaUG- -5'
6617 3' -55.3 NC_001847.1 + 129457 0.67 0.900596
Target:  5'- -uGCCGGGucuggGCGGCCCcGGCCg------ -3'
miRNA:   3'- ccUGGCCC-----UGCUGGG-CCGGaaauaug -5'
6617 3' -55.3 NC_001847.1 + 129337 0.7 0.743104
Target:  5'- gGGGCCGGGGgcguuCGGCCauGCUUUcAUGCa -3'
miRNA:   3'- -CCUGGCCCU-----GCUGGgcCGGAAaUAUG- -5'
6617 3' -55.3 NC_001847.1 + 128680 0.74 0.530793
Target:  5'- cGugCGGGACuGCCUGGCCac-GUACg -3'
miRNA:   3'- cCugGCCCUGcUGGGCCGGaaaUAUG- -5'
6617 3' -55.3 NC_001847.1 + 128025 0.73 0.581017
Target:  5'- cGGGCCaGGAgGAgCCCGGCCgug--GCg -3'
miRNA:   3'- -CCUGGcCCUgCU-GGGCCGGaaauaUG- -5'
6617 3' -55.3 NC_001847.1 + 125910 0.66 0.929628
Target:  5'- uGGGCUgGGGugGGCUgGGCUgggGUGg -3'
miRNA:   3'- -CCUGG-CCCugCUGGgCCGGaaaUAUg -5'
6617 3' -55.3 NC_001847.1 + 125880 0.66 0.929628
Target:  5'- uGGGCUgGGGugGGCUgGGCUgggGUGg -3'
miRNA:   3'- -CCUGG-CCCugCUGGgCCGGaaaUAUg -5'
6617 3' -55.3 NC_001847.1 + 125488 0.68 0.858138
Target:  5'- cGGGCgCGaGGACG-CCCGGCUg------ -3'
miRNA:   3'- -CCUG-GC-CCUGCuGGGCCGGaaauaug -5'
6617 3' -55.3 NC_001847.1 + 124859 0.66 0.9243
Target:  5'- uGACUGGcGagcgcGCGGCCCgcGGUUUUUAUGCg -3'
miRNA:   3'- cCUGGCC-C-----UGCUGGG--CCGGAAAUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.