Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6644 | 5' | -51.8 | NC_001847.1 | + | 95855 | 1.09 | 0.006724 |
Target: 5'- gCACACGAACGUCAGCGAGUUCGUGGAg -3' miRNA: 3'- -GUGUGCUUGCAGUCGCUCAAGCACCU- -5' |
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6644 | 5' | -51.8 | NC_001847.1 | + | 109450 | 0.8 | 0.415696 |
Target: 5'- --gGCGGcuuACGUCGGCGAGgUCGUGGAu -3' miRNA: 3'- gugUGCU---UGCAGUCGCUCaAGCACCU- -5' |
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6644 | 5' | -51.8 | NC_001847.1 | + | 35519 | 0.74 | 0.728692 |
Target: 5'- gCGCGcCGAGCGcauccUCGGCGAGgUCGUGGc -3' miRNA: 3'- -GUGU-GCUUGC-----AGUCGCUCaAGCACCu -5' |
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6644 | 5' | -51.8 | NC_001847.1 | + | 70561 | 0.73 | 0.748755 |
Target: 5'- gAgGCGGACGUgcccguaacguaCGGCGAGUUCGUGa- -3' miRNA: 3'- gUgUGCUUGCA------------GUCGCUCAAGCACcu -5' |
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6644 | 5' | -51.8 | NC_001847.1 | + | 53853 | 0.72 | 0.796841 |
Target: 5'- gGCGCGGGgGUCAGgGGGUgcUGUGGGg -3' miRNA: 3'- gUGUGCUUgCAGUCgCUCAa-GCACCU- -5' |
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6644 | 5' | -51.8 | NC_001847.1 | + | 69776 | 0.71 | 0.857324 |
Target: 5'- gCGCGCGAAaGUCAGCGGGcUCGUu-- -3' miRNA: 3'- -GUGUGCUUgCAGUCGCUCaAGCAccu -5' |
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6644 | 5' | -51.8 | NC_001847.1 | + | 40865 | 0.71 | 0.865163 |
Target: 5'- aCGCGCGAACGccggaAGUGAGc-CGUGGAc -3' miRNA: 3'- -GUGUGCUUGCag---UCGCUCaaGCACCU- -5' |
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6644 | 5' | -51.8 | NC_001847.1 | + | 109838 | 0.7 | 0.887328 |
Target: 5'- gGCGCGcccuCGUCGGCGAGggcgccaCGUGGu -3' miRNA: 3'- gUGUGCuu--GCAGUCGCUCaa-----GCACCu -5' |
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6644 | 5' | -51.8 | NC_001847.1 | + | 31432 | 0.7 | 0.900922 |
Target: 5'- cCGCgGCGGACGUCgcuGGCGcuGGUgaUCGUGGGc -3' miRNA: 3'- -GUG-UGCUUGCAG---UCGC--UCA--AGCACCU- -5' |
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6644 | 5' | -51.8 | NC_001847.1 | + | 32821 | 0.7 | 0.907352 |
Target: 5'- gCGCGCGAGCG-C-GCGAGgcccgCGUGGc -3' miRNA: 3'- -GUGUGCUUGCaGuCGCUCaa---GCACCu -5' |
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6644 | 5' | -51.8 | NC_001847.1 | + | 113351 | 0.69 | 0.919464 |
Target: 5'- gCGCACGAACGUC-GCGAGgaacUGGc -3' miRNA: 3'- -GUGUGCUUGCAGuCGCUCaagcACCu -5' |
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6644 | 5' | -51.8 | NC_001847.1 | + | 93209 | 0.69 | 0.919464 |
Target: 5'- aGCGCGAcuGCGaCGGCGAGggCGaGGGc -3' miRNA: 3'- gUGUGCU--UGCaGUCGCUCaaGCaCCU- -5' |
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6644 | 5' | -51.8 | NC_001847.1 | + | 57388 | 0.69 | 0.930568 |
Target: 5'- cUACGCGuACGUgCGGCGGGUcccgcUCGcGGAg -3' miRNA: 3'- -GUGUGCuUGCA-GUCGCUCA-----AGCaCCU- -5' |
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6644 | 5' | -51.8 | NC_001847.1 | + | 48389 | 0.69 | 0.932146 |
Target: 5'- gCACGCGAACGUCAcgccagcGCGAcacaucgcccuccgcGggccgCGUGGAg -3' miRNA: 3'- -GUGUGCUUGCAGU-------CGCU---------------Caa---GCACCU- -5' |
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6644 | 5' | -51.8 | NC_001847.1 | + | 89555 | 0.69 | 0.935741 |
Target: 5'- cUACGUGAuCGUCgcgcccGGCGAGggCGUGGAg -3' miRNA: 3'- -GUGUGCUuGCAG------UCGCUCaaGCACCU- -5' |
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6644 | 5' | -51.8 | NC_001847.1 | + | 31008 | 0.69 | 0.935741 |
Target: 5'- gCGCugGGGC-UCGGgGAGccggacUUCGUGGAg -3' miRNA: 3'- -GUGugCUUGcAGUCgCUC------AAGCACCU- -5' |
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6644 | 5' | -51.8 | NC_001847.1 | + | 133821 | 0.69 | 0.935741 |
Target: 5'- gCGCugGGGC-UCGGgGAGccggacUUCGUGGAg -3' miRNA: 3'- -GUGugCUUGcAGUCgCUC------AAGCACCU- -5' |
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6644 | 5' | -51.8 | NC_001847.1 | + | 126265 | 0.68 | 0.945332 |
Target: 5'- gGCGucCGGgguCGUCGGCGAGUUCcuaUGGAa -3' miRNA: 3'- gUGU--GCUu--GCAGUCGCUCAAGc--ACCU- -5' |
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6644 | 5' | -51.8 | NC_001847.1 | + | 23452 | 0.68 | 0.945332 |
Target: 5'- gGCGucCGGgguCGUCGGCGAGUUCcuaUGGAa -3' miRNA: 3'- gUGU--GCUu--GCAGUCGCUCAAGc--ACCU- -5' |
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6644 | 5' | -51.8 | NC_001847.1 | + | 66546 | 0.68 | 0.948454 |
Target: 5'- cCGCugGAcgcgugcgccuacuGCGgCAGCGuGUUCGUGcGAu -3' miRNA: 3'- -GUGugCU--------------UGCaGUCGCuCAAGCAC-CU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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