Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6644 | 5' | -51.8 | NC_001847.1 | + | 3813 | 0.66 | 0.988487 |
Target: 5'- gGCACgGGGCGUCGgccGCGAG--CGUGGc -3' miRNA: 3'- gUGUG-CUUGCAGU---CGCUCaaGCACCu -5' |
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6644 | 5' | -51.8 | NC_001847.1 | + | 12018 | 0.66 | 0.988487 |
Target: 5'- -uCugGGGCGcCGGCGAGgUCGUaGGc -3' miRNA: 3'- guGugCUUGCaGUCGCUCaAGCA-CCu -5' |
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6644 | 5' | -51.8 | NC_001847.1 | + | 15323 | 0.66 | 0.985243 |
Target: 5'- -cCGCGGGCG-UAGCGGGggCGggcgGGGg -3' miRNA: 3'- guGUGCUUGCaGUCGCUCaaGCa---CCU- -5' |
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6644 | 5' | -51.8 | NC_001847.1 | + | 23452 | 0.68 | 0.945332 |
Target: 5'- gGCGucCGGgguCGUCGGCGAGUUCcuaUGGAa -3' miRNA: 3'- gUGU--GCUu--GCAGUCGCUCAAGc--ACCU- -5' |
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6644 | 5' | -51.8 | NC_001847.1 | + | 28284 | 0.67 | 0.965037 |
Target: 5'- gCACGCGAggACG-CGGCGug--CGUGGGu -3' miRNA: 3'- -GUGUGCU--UGCaGUCGCucaaGCACCU- -5' |
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6644 | 5' | -51.8 | NC_001847.1 | + | 31008 | 0.69 | 0.935741 |
Target: 5'- gCGCugGGGC-UCGGgGAGccggacUUCGUGGAg -3' miRNA: 3'- -GUGugCUUGcAGUCgCUC------AAGCACCU- -5' |
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6644 | 5' | -51.8 | NC_001847.1 | + | 31432 | 0.7 | 0.900922 |
Target: 5'- cCGCgGCGGACGUCgcuGGCGcuGGUgaUCGUGGGc -3' miRNA: 3'- -GUG-UGCUUGCAG---UCGC--UCA--AGCACCU- -5' |
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6644 | 5' | -51.8 | NC_001847.1 | + | 32006 | 0.66 | 0.980697 |
Target: 5'- gACGCGGGCGUggagcgcgaagcucCGGCGGGgcgCGgGGAc -3' miRNA: 3'- gUGUGCUUGCA--------------GUCGCUCaa-GCaCCU- -5' |
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6644 | 5' | -51.8 | NC_001847.1 | + | 32821 | 0.7 | 0.907352 |
Target: 5'- gCGCGCGAGCG-C-GCGAGgcccgCGUGGc -3' miRNA: 3'- -GUGUGCUUGCaGuCGCUCaa---GCACCu -5' |
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6644 | 5' | -51.8 | NC_001847.1 | + | 33505 | 0.66 | 0.986942 |
Target: 5'- gGCGCGGGCGgCGGCGGGcgccgcCGcGGAg -3' miRNA: 3'- gUGUGCUUGCaGUCGCUCaa----GCaCCU- -5' |
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6644 | 5' | -51.8 | NC_001847.1 | + | 34298 | 0.67 | 0.96828 |
Target: 5'- -uCGCGGcCGUCAGCGAGgcUUCG-GGc -3' miRNA: 3'- guGUGCUuGCAGUCGCUC--AAGCaCCu -5' |
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6644 | 5' | -51.8 | NC_001847.1 | + | 35225 | 0.66 | 0.979126 |
Target: 5'- gCGCGCGGACGUgcugcaggcggcCGGCGGGcgCGcggcGGAg -3' miRNA: 3'- -GUGUGCUUGCA------------GUCGCUCaaGCa---CCU- -5' |
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6644 | 5' | -51.8 | NC_001847.1 | + | 35519 | 0.74 | 0.728692 |
Target: 5'- gCGCGcCGAGCGcauccUCGGCGAGgUCGUGGc -3' miRNA: 3'- -GUGU-GCUUGC-----AGUCGCUCaAGCACCu -5' |
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6644 | 5' | -51.8 | NC_001847.1 | + | 40865 | 0.71 | 0.865163 |
Target: 5'- aCGCGCGAACGccggaAGUGAGc-CGUGGAc -3' miRNA: 3'- -GUGUGCUUGCag---UCGCUCaaGCACCU- -5' |
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6644 | 5' | -51.8 | NC_001847.1 | + | 46329 | 0.66 | 0.980697 |
Target: 5'- aGCACGGccgcccgcggggccGCGUCGGCGGcaUCGgGGGg -3' miRNA: 3'- gUGUGCU--------------UGCAGUCGCUcaAGCaCCU- -5' |
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6644 | 5' | -51.8 | NC_001847.1 | + | 46887 | 0.68 | 0.957869 |
Target: 5'- aCGCguGCGAGCGccgcuUCAGCGAGgcuUCGgGGGg -3' miRNA: 3'- -GUG--UGCUUGC-----AGUCGCUCa--AGCaCCU- -5' |
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6644 | 5' | -51.8 | NC_001847.1 | + | 48389 | 0.69 | 0.932146 |
Target: 5'- gCACGCGAACGUCAcgccagcGCGAcacaucgcccuccgcGggccgCGUGGAg -3' miRNA: 3'- -GUGUGCUUGCAGU-------CGCU---------------Caa---GCACCU- -5' |
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6644 | 5' | -51.8 | NC_001847.1 | + | 52481 | 0.68 | 0.961209 |
Target: 5'- aGCACGAGCG-CGGCGcgccgcgcucgcgGGUUCG-GGu -3' miRNA: 3'- gUGUGCUUGCaGUCGC-------------UCAAGCaCCu -5' |
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6644 | 5' | -51.8 | NC_001847.1 | + | 53853 | 0.72 | 0.796841 |
Target: 5'- gGCGCGGGgGUCAGgGGGUgcUGUGGGg -3' miRNA: 3'- gUGUGCUUgCAGUCgCUCAa-GCACCU- -5' |
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6644 | 5' | -51.8 | NC_001847.1 | + | 57388 | 0.69 | 0.930568 |
Target: 5'- cUACGCGuACGUgCGGCGGGUcccgcUCGcGGAg -3' miRNA: 3'- -GUGUGCuUGCA-GUCGCUCA-----AGCaCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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