miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6644 5' -51.8 NC_001847.1 + 60119 0.66 0.988487
Target:  5'- uCGCGCG-GCGUgAGCGAGggggCGUcGGc -3'
miRNA:   3'- -GUGUGCuUGCAgUCGCUCaa--GCA-CCu -5'
6644 5' -51.8 NC_001847.1 + 82460 0.67 0.965037
Target:  5'- gCGCACGGccGCGUgCGGCGuGc-CGUGGGa -3'
miRNA:   3'- -GUGUGCU--UGCA-GUCGCuCaaGCACCU- -5'
6644 5' -51.8 NC_001847.1 + 34298 0.67 0.96828
Target:  5'- -uCGCGGcCGUCAGCGAGgcUUCG-GGc -3'
miRNA:   3'- guGUGCUuGCAGUCGCUC--AAGCaCCu -5'
6644 5' -51.8 NC_001847.1 + 77795 0.67 0.96828
Target:  5'- aGCGCGGAUGUCuG-GAGgaCGUGGc -3'
miRNA:   3'- gUGUGCUUGCAGuCgCUCaaGCACCu -5'
6644 5' -51.8 NC_001847.1 + 77252 0.67 0.971303
Target:  5'- uCGCGCGGGCGcUGGCGGGcgacacccUCGUGGc -3'
miRNA:   3'- -GUGUGCUUGCaGUCGCUCa-------AGCACCu -5'
6644 5' -51.8 NC_001847.1 + 35225 0.66 0.979126
Target:  5'- gCGCGCGGACGUgcugcaggcggcCGGCGGGcgCGcggcGGAg -3'
miRNA:   3'- -GUGUGCUUGCA------------GUCGCUCaaGCa---CCU- -5'
6644 5' -51.8 NC_001847.1 + 134819 0.66 0.980697
Target:  5'- gACGCGGGCGUggagcgcgaagcucCGGCGGGgcgCGgGGAc -3'
miRNA:   3'- gUGUGCUUGCA--------------GUCGCUCaa-GCaCCU- -5'
6644 5' -51.8 NC_001847.1 + 33505 0.66 0.986942
Target:  5'- gGCGCGGGCGgCGGCGGGcgccgcCGcGGAg -3'
miRNA:   3'- gUGUGCUUGCaGUCGCUCaa----GCaCCU- -5'
6644 5' -51.8 NC_001847.1 + 3813 0.66 0.988487
Target:  5'- gGCACgGGGCGUCGgccGCGAG--CGUGGc -3'
miRNA:   3'- gUGUG-CUUGCAGU---CGCUCaaGCACCu -5'
6644 5' -51.8 NC_001847.1 + 28284 0.67 0.965037
Target:  5'- gCACGCGAggACG-CGGCGug--CGUGGGu -3'
miRNA:   3'- -GUGUGCU--UGCaGUCGCucaaGCACCU- -5'
6644 5' -51.8 NC_001847.1 + 64177 0.68 0.961569
Target:  5'- uGCGCGGACGgggCGGCGGGcgCGacgcUGGc -3'
miRNA:   3'- gUGUGCUUGCa--GUCGCUCaaGC----ACCu -5'
6644 5' -51.8 NC_001847.1 + 68283 0.68 0.949754
Target:  5'- gUACACGAagcccgagagcGCGUUGGUGA--UCGUGGGc -3'
miRNA:   3'- -GUGUGCU-----------UGCAGUCGCUcaAGCACCU- -5'
6644 5' -51.8 NC_001847.1 + 35519 0.74 0.728692
Target:  5'- gCGCGcCGAGCGcauccUCGGCGAGgUCGUGGc -3'
miRNA:   3'- -GUGU-GCUUGC-----AGUCGCUCaAGCACCu -5'
6644 5' -51.8 NC_001847.1 + 70561 0.73 0.748755
Target:  5'- gAgGCGGACGUgcccguaacguaCGGCGAGUUCGUGa- -3'
miRNA:   3'- gUgUGCUUGCA------------GUCGCUCAAGCACcu -5'
6644 5' -51.8 NC_001847.1 + 31432 0.7 0.900922
Target:  5'- cCGCgGCGGACGUCgcuGGCGcuGGUgaUCGUGGGc -3'
miRNA:   3'- -GUG-UGCUUGCAG---UCGC--UCA--AGCACCU- -5'
6644 5' -51.8 NC_001847.1 + 32821 0.7 0.907352
Target:  5'- gCGCGCGAGCG-C-GCGAGgcccgCGUGGc -3'
miRNA:   3'- -GUGUGCUUGCaGuCGCUCaa---GCACCu -5'
6644 5' -51.8 NC_001847.1 + 57388 0.69 0.930568
Target:  5'- cUACGCGuACGUgCGGCGGGUcccgcUCGcGGAg -3'
miRNA:   3'- -GUGUGCuUGCA-GUCGCUCA-----AGCaCCU- -5'
6644 5' -51.8 NC_001847.1 + 133821 0.69 0.935741
Target:  5'- gCGCugGGGC-UCGGgGAGccggacUUCGUGGAg -3'
miRNA:   3'- -GUGugCUUGcAGUCgCUC------AAGCACCU- -5'
6644 5' -51.8 NC_001847.1 + 126265 0.68 0.945332
Target:  5'- gGCGucCGGgguCGUCGGCGAGUUCcuaUGGAa -3'
miRNA:   3'- gUGU--GCUu--GCAGUCGCUCAAGc--ACCU- -5'
6644 5' -51.8 NC_001847.1 + 66546 0.68 0.948454
Target:  5'- cCGCugGAcgcgugcgccuacuGCGgCAGCGuGUUCGUGcGAu -3'
miRNA:   3'- -GUGugCU--------------UGCaGUCGCuCAAGCAC-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.