miRNA display CGI


Results 21 - 40 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6653 3' -59.7 NC_001847.1 + 28106 0.76 0.238455
Target:  5'- uGCC-CUCGGGGCCAGGAccgaGGCcgGCGAc -3'
miRNA:   3'- -CGGcGAGCCCCGGUUCUag--UCG--CGCU- -5'
6653 3' -59.7 NC_001847.1 + 2908 0.75 0.25002
Target:  5'- aCCGCgcgagCGGGGCCAcGGUCcgcgccgccAGCGCGGc -3'
miRNA:   3'- cGGCGa----GCCCCGGUuCUAG---------UCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 105721 0.75 0.25002
Target:  5'- aCCGCgcgagCGGGGCCAcGGUCcgcgccgccAGCGCGGc -3'
miRNA:   3'- cGGCGa----GCCCCGGUuCUAG---------UCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 53712 0.75 0.255973
Target:  5'- cGCCGCcggcggcucgCGGGGC--GGAUCGGCGCGc -3'
miRNA:   3'- -CGGCGa---------GCCCCGguUCUAGUCGCGCu -5'
6653 3' -59.7 NC_001847.1 + 130799 0.75 0.268229
Target:  5'- gGCCGCggcCGGGGCgGAGG-CGGcCGCGGc -3'
miRNA:   3'- -CGGCGa--GCCCCGgUUCUaGUC-GCGCU- -5'
6653 3' -59.7 NC_001847.1 + 27986 0.75 0.268229
Target:  5'- gGCCGCggcCGGGGCgGAGG-CGGcCGCGGc -3'
miRNA:   3'- -CGGCGa--GCCCCGgUUCUaGUC-GCGCU- -5'
6653 3' -59.7 NC_001847.1 + 102852 0.75 0.268229
Target:  5'- gGCgGCgucgCGGGGCCGcgccacgcGGA-CGGCGCGAg -3'
miRNA:   3'- -CGgCGa---GCCCCGGU--------UCUaGUCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 88554 0.75 0.274532
Target:  5'- gGCCGCgccggCGGGGCUGAcGccCGGCGCGGa -3'
miRNA:   3'- -CGGCGa----GCCCCGGUU-CuaGUCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 135023 0.74 0.280954
Target:  5'- cCCGCgggCGGGGCCGGGGcgCGGgGCGc -3'
miRNA:   3'- cGGCGa--GCCCCGGUUCUa-GUCgCGCu -5'
6653 3' -59.7 NC_001847.1 + 32210 0.74 0.280954
Target:  5'- cCCGCgggCGGGGCCGGGGcgCGGgGCGc -3'
miRNA:   3'- cGGCGa--GCCCCGGUUCUa-GUCgCGCu -5'
6653 3' -59.7 NC_001847.1 + 27518 0.74 0.294154
Target:  5'- cGCCGCggcggcggCGGGGacgcCCGAGAacggCGGCGCGGc -3'
miRNA:   3'- -CGGCGa-------GCCCC----GGUUCUa---GUCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 116747 0.74 0.296851
Target:  5'- cGCCGCgcugugcuucugcgCGGGGCCugcuGGGUCuGCGCcGAc -3'
miRNA:   3'- -CGGCGa-------------GCCCCGGu---UCUAGuCGCG-CU- -5'
6653 3' -59.7 NC_001847.1 + 100741 0.74 0.300933
Target:  5'- cGCCGagcuCUCGGGGCCGGGGUCcaGGuCGCc- -3'
miRNA:   3'- -CGGC----GAGCCCCGGUUCUAG--UC-GCGcu -5'
6653 3' -59.7 NC_001847.1 + 135132 0.74 0.307832
Target:  5'- gGUCGCagGGGGCCcgcgcGGcgCGGCGCGGa -3'
miRNA:   3'- -CGGCGagCCCCGGu----UCuaGUCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 32319 0.74 0.307832
Target:  5'- gGUCGCagGGGGCCcgcgcGGcgCGGCGCGGa -3'
miRNA:   3'- -CGGCGagCCCCGGu----UCuaGUCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 18763 0.74 0.314851
Target:  5'- cGCCGCggcuaaggCGGcGGCCGA---CAGCGCGAg -3'
miRNA:   3'- -CGGCGa-------GCC-CCGGUUcuaGUCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 80510 0.73 0.32199
Target:  5'- aGCCGCUCGGcauagcgcugucGGCgCAcgucGGcAUCGGCGCGGg -3'
miRNA:   3'- -CGGCGAGCC------------CCG-GU----UC-UAGUCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 92215 0.73 0.33663
Target:  5'- gGCCGCUUGGgcGGCCAg---CAGCGCGc -3'
miRNA:   3'- -CGGCGAGCC--CCGGUucuaGUCGCGCu -5'
6653 3' -59.7 NC_001847.1 + 115540 0.73 0.33663
Target:  5'- gGCCcgaGCUC-GGGCCcGGAUCGGgGCGGg -3'
miRNA:   3'- -CGG---CGAGcCCCGGuUCUAGUCgCGCU- -5'
6653 3' -59.7 NC_001847.1 + 31094 0.73 0.33663
Target:  5'- cGgCGCU-GGGGCCGGG--CAGCGCGGu -3'
miRNA:   3'- -CgGCGAgCCCCGGUUCuaGUCGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.