Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6655 | 3' | -57.6 | NC_001847.1 | + | 101669 | 1.07 | 0.00249 |
Target: 5'- aGGUGCUGAGCCCCGACGACGACUCUUc -3' miRNA: 3'- -CCACGACUCGGGGCUGCUGCUGAGAA- -5' |
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6655 | 3' | -57.6 | NC_001847.1 | + | 15112 | 0.75 | 0.323177 |
Target: 5'- -aUGCUGAcgGCCCUGACGGCGGCggugCUg -3' miRNA: 3'- ccACGACU--CGGGGCUGCUGCUGa---GAa -5' |
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6655 | 3' | -57.6 | NC_001847.1 | + | 65824 | 0.73 | 0.402665 |
Target: 5'- cGGcUGCUG-GCCCaCGGCGugGugUCg- -3' miRNA: 3'- -CC-ACGACuCGGG-GCUGCugCugAGaa -5' |
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6655 | 3' | -57.6 | NC_001847.1 | + | 75456 | 0.72 | 0.455938 |
Target: 5'- uGGcUGCUGuuGCCCuCGACGGCGACa--- -3' miRNA: 3'- -CC-ACGACu-CGGG-GCUGCUGCUGagaa -5' |
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6655 | 3' | -57.6 | NC_001847.1 | + | 114500 | 0.71 | 0.51278 |
Target: 5'- -cUGCUGAGCCCCuuUGGCGcCUCg- -3' miRNA: 3'- ccACGACUCGGGGcuGCUGCuGAGaa -5' |
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6655 | 3' | -57.6 | NC_001847.1 | + | 36364 | 0.71 | 0.562261 |
Target: 5'- uGGUccCUGcGGCCCUGGCGACGGCaUCUa -3' miRNA: 3'- -CCAc-GAC-UCGGGGCUGCUGCUG-AGAa -5' |
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6655 | 3' | -57.6 | NC_001847.1 | + | 58282 | 0.7 | 0.572325 |
Target: 5'- uGUGCUcGGCCgCGGCGACGGCg--- -3' miRNA: 3'- cCACGAcUCGGgGCUGCUGCUGagaa -5' |
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6655 | 3' | -57.6 | NC_001847.1 | + | 94146 | 0.7 | 0.592575 |
Target: 5'- aGGUGCUGGGCgacauCUCG-CGGCGGCUgCUg -3' miRNA: 3'- -CCACGACUCG-----GGGCuGCUGCUGA-GAa -5' |
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6655 | 3' | -57.6 | NC_001847.1 | + | 54254 | 0.7 | 0.592575 |
Target: 5'- --cGCUGcgguGGCgCCCGACGAgCGGCUCg- -3' miRNA: 3'- ccaCGAC----UCG-GGGCUGCU-GCUGAGaa -5' |
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6655 | 3' | -57.6 | NC_001847.1 | + | 59556 | 0.7 | 0.599692 |
Target: 5'- uGGUGCUGGGCCUgGAgcacuuuuuuuugcCGGCG-CUCa- -3' miRNA: 3'- -CCACGACUCGGGgCU--------------GCUGCuGAGaa -5' |
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6655 | 3' | -57.6 | NC_001847.1 | + | 34186 | 0.69 | 0.623147 |
Target: 5'- cGGcGCcGAGCCCCGcuguuaccGCGGCGGCUa-- -3' miRNA: 3'- -CCaCGaCUCGGGGC--------UGCUGCUGAgaa -5' |
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6655 | 3' | -57.6 | NC_001847.1 | + | 107843 | 0.69 | 0.643574 |
Target: 5'- gGGgaaGCUcGGGCgaCCGGCGGCGGCUCc- -3' miRNA: 3'- -CCa--CGA-CUCGg-GGCUGCUGCUGAGaa -5' |
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6655 | 3' | -57.6 | NC_001847.1 | + | 81031 | 0.69 | 0.643574 |
Target: 5'- cGGUGCUGcGCcuCCCGcGCGGCGAgcgcCUCUa -3' miRNA: 3'- -CCACGACuCG--GGGC-UGCUGCU----GAGAa -5' |
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6655 | 3' | -57.6 | NC_001847.1 | + | 33437 | 0.69 | 0.643574 |
Target: 5'- --cGgaGGGCUCgGAgGACGACUCUUg -3' miRNA: 3'- ccaCgaCUCGGGgCUgCUGCUGAGAA- -5' |
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6655 | 3' | -57.6 | NC_001847.1 | + | 5030 | 0.69 | 0.643574 |
Target: 5'- gGGgaaGCUcGGGCgaCCGGCGGCGGCUCc- -3' miRNA: 3'- -CCa--CGA-CUCGg-GGCUGCUGCUGAGaa -5' |
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6655 | 3' | -57.6 | NC_001847.1 | + | 132730 | 0.69 | 0.643574 |
Target: 5'- --cGCggGGGCCCCucggggGAgGACGACUCUg -3' miRNA: 3'- ccaCGa-CUCGGGG------CUgCUGCUGAGAa -5' |
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6655 | 3' | -57.6 | NC_001847.1 | + | 62915 | 0.69 | 0.674127 |
Target: 5'- gGGUGCUcGGGgCCCG-CGgGCGGCUCc- -3' miRNA: 3'- -CCACGA-CUCgGGGCuGC-UGCUGAGaa -5' |
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6655 | 3' | -57.6 | NC_001847.1 | + | 74911 | 0.69 | 0.674127 |
Target: 5'- cGUGCU-AGCCcucgCCGACGACGACg--- -3' miRNA: 3'- cCACGAcUCGG----GGCUGCUGCUGagaa -5' |
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6655 | 3' | -57.6 | NC_001847.1 | + | 81439 | 0.69 | 0.674127 |
Target: 5'- --cGC-GAGCCgCCGGCGGCGcGCUCg- -3' miRNA: 3'- ccaCGaCUCGG-GGCUGCUGC-UGAGaa -5' |
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6655 | 3' | -57.6 | NC_001847.1 | + | 134029 | 0.68 | 0.684254 |
Target: 5'- uGGUGCUGgaGGCCgCGGCGGCGcCg--- -3' miRNA: 3'- -CCACGAC--UCGGgGCUGCUGCuGagaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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