miRNA display CGI


Results 1 - 20 of 46 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6655 3' -57.6 NC_001847.1 + 88874 0.66 0.79985
Target:  5'- cGGUGCgcgcGGCggCGGCGGCGGCUCc- -3'
miRNA:   3'- -CCACGac--UCGggGCUGCUGCUGAGaa -5'
6655 3' -57.6 NC_001847.1 + 80685 0.68 0.714343
Target:  5'- --gGCUGcGCgCCGGCGGCGGCUg-- -3'
miRNA:   3'- ccaCGACuCGgGGCUGCUGCUGAgaa -5'
6655 3' -57.6 NC_001847.1 + 27858 0.68 0.724245
Target:  5'- cGUGC-GGGCCCUGugGGCcgcGCUCg- -3'
miRNA:   3'- cCACGaCUCGGGGCugCUGc--UGAGaa -5'
6655 3' -57.6 NC_001847.1 + 89285 0.68 0.724245
Target:  5'- --aGCUGAaCCCCGGCGGCGAa---- -3'
miRNA:   3'- ccaCGACUcGGGGCUGCUGCUgagaa -5'
6655 3' -57.6 NC_001847.1 + 120192 0.67 0.753441
Target:  5'- uGGUGCUG-GCCgCGcgaGCGGCGcccGCUCg- -3'
miRNA:   3'- -CCACGACuCGGgGC---UGCUGC---UGAGaa -5'
6655 3' -57.6 NC_001847.1 + 55609 0.67 0.772388
Target:  5'- --aGCccccccGGCCCCGACGGCGACg--- -3'
miRNA:   3'- ccaCGac----UCGGGGCUGCUGCUGagaa -5'
6655 3' -57.6 NC_001847.1 + 57687 0.67 0.772388
Target:  5'- uGGUGCUGGGCgCCG-CGGgugcCGcGCUCUc -3'
miRNA:   3'- -CCACGACUCGgGGCuGCU----GC-UGAGAa -5'
6655 3' -57.6 NC_001847.1 + 49902 0.67 0.781678
Target:  5'- cGUGCUGGGCCCgGccGCGGUGGCgCUg -3'
miRNA:   3'- cCACGACUCGGGgC--UGCUGCUGaGAa -5'
6655 3' -57.6 NC_001847.1 + 116073 0.66 0.79985
Target:  5'- --aGCgGGGCCgaCGACGGCGACUg-- -3'
miRNA:   3'- ccaCGaCUCGGg-GCUGCUGCUGAgaa -5'
6655 3' -57.6 NC_001847.1 + 59275 0.68 0.704371
Target:  5'- --gGCUcucGAGCCCCGGCGGCGGg---- -3'
miRNA:   3'- ccaCGA---CUCGGGGCUGCUGCUgagaa -5'
6655 3' -57.6 NC_001847.1 + 31965 0.68 0.694339
Target:  5'- cGGcgGCggcGGGCCCCGugGACGccgccCUCg- -3'
miRNA:   3'- -CCa-CGa--CUCGGGGCugCUGCu----GAGaa -5'
6655 3' -57.6 NC_001847.1 + 134029 0.68 0.684254
Target:  5'- uGGUGCUGgaGGCCgCGGCGGCGcCg--- -3'
miRNA:   3'- -CCACGAC--UCGGgGCUGCUGCuGagaa -5'
6655 3' -57.6 NC_001847.1 + 15112 0.75 0.323177
Target:  5'- -aUGCUGAcgGCCCUGACGGCGGCggugCUg -3'
miRNA:   3'- ccACGACU--CGGGGCUGCUGCUGa---GAa -5'
6655 3' -57.6 NC_001847.1 + 65824 0.73 0.402665
Target:  5'- cGGcUGCUG-GCCCaCGGCGugGugUCg- -3'
miRNA:   3'- -CC-ACGACuCGGG-GCUGCugCugAGaa -5'
6655 3' -57.6 NC_001847.1 + 75456 0.72 0.455938
Target:  5'- uGGcUGCUGuuGCCCuCGACGGCGACa--- -3'
miRNA:   3'- -CC-ACGACu-CGGG-GCUGCUGCUGagaa -5'
6655 3' -57.6 NC_001847.1 + 94146 0.7 0.592575
Target:  5'- aGGUGCUGGGCgacauCUCG-CGGCGGCUgCUg -3'
miRNA:   3'- -CCACGACUCG-----GGGCuGCUGCUGA-GAa -5'
6655 3' -57.6 NC_001847.1 + 54254 0.7 0.592575
Target:  5'- --cGCUGcgguGGCgCCCGACGAgCGGCUCg- -3'
miRNA:   3'- ccaCGAC----UCG-GGGCUGCU-GCUGAGaa -5'
6655 3' -57.6 NC_001847.1 + 107843 0.69 0.643574
Target:  5'- gGGgaaGCUcGGGCgaCCGGCGGCGGCUCc- -3'
miRNA:   3'- -CCa--CGA-CUCGg-GGCUGCUGCUGAGaa -5'
6655 3' -57.6 NC_001847.1 + 132730 0.69 0.643574
Target:  5'- --cGCggGGGCCCCucggggGAgGACGACUCUg -3'
miRNA:   3'- ccaCGa-CUCGGGG------CUgCUGCUGAGAa -5'
6655 3' -57.6 NC_001847.1 + 81439 0.69 0.674127
Target:  5'- --cGC-GAGCCgCCGGCGGCGcGCUCg- -3'
miRNA:   3'- ccaCGaCUCGG-GGCUGCUGC-UGAGaa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.