miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6655 3' -57.6 NC_001847.1 + 2308 0.66 0.814824
Target:  5'- cGGgcgGCaUGGGCCCCaGcacgcgggcgggcaGCGGCGGCUCc- -3'
miRNA:   3'- -CCa--CG-ACUCGGGG-C--------------UGCUGCUGAGaa -5'
6655 3' -57.6 NC_001847.1 + 5030 0.69 0.643574
Target:  5'- gGGgaaGCUcGGGCgaCCGGCGGCGGCUCc- -3'
miRNA:   3'- -CCa--CGA-CUCGg-GGCUGCUGCUGAGaa -5'
6655 3' -57.6 NC_001847.1 + 15112 0.75 0.323177
Target:  5'- -aUGCUGAcgGCCCUGACGGCGGCggugCUg -3'
miRNA:   3'- ccACGACU--CGGGGCUGCUGCUGa---GAa -5'
6655 3' -57.6 NC_001847.1 + 26552 0.66 0.817418
Target:  5'- -aUGCaaaUGAGCCCCGACaGCcGCUCc- -3'
miRNA:   3'- ccACG---ACUCGGGGCUGcUGcUGAGaa -5'
6655 3' -57.6 NC_001847.1 + 27858 0.68 0.724245
Target:  5'- cGUGC-GGGCCCUGugGGCcgcGCUCg- -3'
miRNA:   3'- cCACGaCUCGGGGCugCUGc--UGAGaa -5'
6655 3' -57.6 NC_001847.1 + 31216 0.68 0.684254
Target:  5'- uGGUGCUGgaGGCCgCGGCGGCGcCg--- -3'
miRNA:   3'- -CCACGAC--UCGGgGCUGCUGCuGagaa -5'
6655 3' -57.6 NC_001847.1 + 31965 0.68 0.694339
Target:  5'- cGGcgGCggcGGGCCCCGugGACGccgccCUCg- -3'
miRNA:   3'- -CCa-CGa--CUCGGGGCugCUGCu----GAGaa -5'
6655 3' -57.6 NC_001847.1 + 33239 0.68 0.704371
Target:  5'- aGUGC--GGCUUCGACGACGACgggCUg -3'
miRNA:   3'- cCACGacUCGGGGCUGCUGCUGa--GAa -5'
6655 3' -57.6 NC_001847.1 + 33437 0.69 0.643574
Target:  5'- --cGgaGGGCUCgGAgGACGACUCUUg -3'
miRNA:   3'- ccaCgaCUCGGGgCUgCUGCUGAGAA- -5'
6655 3' -57.6 NC_001847.1 + 34109 0.66 0.825954
Target:  5'- gGGUGCgcaaauUGGGaCCCCGgccGCGGCGGCg--- -3'
miRNA:   3'- -CCACG------ACUC-GGGGC---UGCUGCUGagaa -5'
6655 3' -57.6 NC_001847.1 + 34186 0.69 0.623147
Target:  5'- cGGcGCcGAGCCCCGcuguuaccGCGGCGGCUa-- -3'
miRNA:   3'- -CCaCGaCUCGGGGC--------UGCUGCUGAgaa -5'
6655 3' -57.6 NC_001847.1 + 36364 0.71 0.562261
Target:  5'- uGGUccCUGcGGCCCUGGCGACGGCaUCUa -3'
miRNA:   3'- -CCAc-GAC-UCGGGGCUGCUGCUG-AGAa -5'
6655 3' -57.6 NC_001847.1 + 40163 0.67 0.762972
Target:  5'- cGGUGaCUGGGCguCCUGGuCG-CGGCUCUg -3'
miRNA:   3'- -CCAC-GACUCG--GGGCU-GCuGCUGAGAa -5'
6655 3' -57.6 NC_001847.1 + 41646 0.67 0.743803
Target:  5'- gGGUGCgGAuccaCCCGACGcgcggcacGCGGCUCUUc -3'
miRNA:   3'- -CCACGaCUcg--GGGCUGC--------UGCUGAGAA- -5'
6655 3' -57.6 NC_001847.1 + 42333 0.68 0.684254
Target:  5'- cGUGCUGugggcGCCCguguggcgcggCGGCGACGuACUCUUc -3'
miRNA:   3'- cCACGACu----CGGG-----------GCUGCUGC-UGAGAA- -5'
6655 3' -57.6 NC_001847.1 + 49902 0.67 0.781678
Target:  5'- cGUGCUGGGCCCgGccGCGGUGGCgCUg -3'
miRNA:   3'- cCACGACUCGGGgC--UGCUGCUGaGAa -5'
6655 3' -57.6 NC_001847.1 + 54254 0.7 0.592575
Target:  5'- --cGCUGcgguGGCgCCCGACGAgCGGCUCg- -3'
miRNA:   3'- ccaCGAC----UCG-GGGCUGCU-GCUGAGaa -5'
6655 3' -57.6 NC_001847.1 + 55609 0.67 0.772388
Target:  5'- --aGCccccccGGCCCCGACGGCGACg--- -3'
miRNA:   3'- ccaCGac----UCGGGGCUGCUGCUGagaa -5'
6655 3' -57.6 NC_001847.1 + 57687 0.67 0.772388
Target:  5'- uGGUGCUGGGCgCCG-CGGgugcCGcGCUCUc -3'
miRNA:   3'- -CCACGACUCGgGGCuGCU----GC-UGAGAa -5'
6655 3' -57.6 NC_001847.1 + 58282 0.7 0.572325
Target:  5'- uGUGCUcGGCCgCGGCGACGGCg--- -3'
miRNA:   3'- cCACGAcUCGGgGCUGCUGCUGagaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.