Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6655 | 3' | -57.6 | NC_001847.1 | + | 134029 | 0.68 | 0.684254 |
Target: 5'- uGGUGCUGgaGGCCgCGGCGGCGcCg--- -3' miRNA: 3'- -CCACGAC--UCGGgGCUGCUGCuGagaa -5' |
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6655 | 3' | -57.6 | NC_001847.1 | + | 132730 | 0.69 | 0.643574 |
Target: 5'- --cGCggGGGCCCCucggggGAgGACGACUCUg -3' miRNA: 3'- ccaCGa-CUCGGGG------CUgCUGCUGAGAa -5' |
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6655 | 3' | -57.6 | NC_001847.1 | + | 129365 | 0.66 | 0.817418 |
Target: 5'- -aUGCaaaUGAGCCCCGACaGCcGCUCc- -3' miRNA: 3'- ccACG---ACUCGGGGCUGcUGcUGAGaa -5' |
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6655 | 3' | -57.6 | NC_001847.1 | + | 128638 | 0.66 | 0.825954 |
Target: 5'- --gGCUGAGCgCgCCGGCGACGccGCUa-- -3' miRNA: 3'- ccaCGACUCG-G-GGCUGCUGC--UGAgaa -5' |
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6655 | 3' | -57.6 | NC_001847.1 | + | 120192 | 0.67 | 0.753441 |
Target: 5'- uGGUGCUG-GCCgCGcgaGCGGCGcccGCUCg- -3' miRNA: 3'- -CCACGACuCGGgGC---UGCUGC---UGAGaa -5' |
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6655 | 3' | -57.6 | NC_001847.1 | + | 118500 | 0.67 | 0.762972 |
Target: 5'- aGGcGCgGGGCCCCGACGGCa------ -3' miRNA: 3'- -CCaCGaCUCGGGGCUGCUGcugagaa -5' |
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6655 | 3' | -57.6 | NC_001847.1 | + | 116073 | 0.66 | 0.79985 |
Target: 5'- --aGCgGGGCCgaCGACGGCGACUg-- -3' miRNA: 3'- ccaCGaCUCGGg-GCUGCUGCUGAgaa -5' |
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6655 | 3' | -57.6 | NC_001847.1 | + | 114500 | 0.71 | 0.51278 |
Target: 5'- -cUGCUGAGCCCCuuUGGCGcCUCg- -3' miRNA: 3'- ccACGACUCGGGGcuGCUGCuGAGaa -5' |
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6655 | 3' | -57.6 | NC_001847.1 | + | 110625 | 0.68 | 0.734068 |
Target: 5'- cGUGCagcgcgcGAGCCCCGACGcccACGGCg--- -3' miRNA: 3'- cCACGa------CUCGGGGCUGC---UGCUGagaa -5' |
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6655 | 3' | -57.6 | NC_001847.1 | + | 107843 | 0.69 | 0.643574 |
Target: 5'- gGGgaaGCUcGGGCgaCCGGCGGCGGCUCc- -3' miRNA: 3'- -CCa--CGA-CUCGg-GGCUGCUGCUGAGaa -5' |
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6655 | 3' | -57.6 | NC_001847.1 | + | 105121 | 0.66 | 0.814824 |
Target: 5'- cGGgcgGCaUGGGCCCCaGcacgcgggcgggcaGCGGCGGCUCc- -3' miRNA: 3'- -CCa--CG-ACUCGGGG-C--------------UGCUGCUGAGaa -5' |
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6655 | 3' | -57.6 | NC_001847.1 | + | 101669 | 1.07 | 0.00249 |
Target: 5'- aGGUGCUGAGCCCCGACGACGACUCUUc -3' miRNA: 3'- -CCACGACUCGGGGCUGCUGCUGAGAA- -5' |
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6655 | 3' | -57.6 | NC_001847.1 | + | 94146 | 0.7 | 0.592575 |
Target: 5'- aGGUGCUGGGCgacauCUCG-CGGCGGCUgCUg -3' miRNA: 3'- -CCACGACUCG-----GGGCuGCUGCUGA-GAa -5' |
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6655 | 3' | -57.6 | NC_001847.1 | + | 91087 | 0.66 | 0.825954 |
Target: 5'- --aGCUGcacgaacagggcGGCCCCGACGcGCGcCUCg- -3' miRNA: 3'- ccaCGAC------------UCGGGGCUGC-UGCuGAGaa -5' |
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6655 | 3' | -57.6 | NC_001847.1 | + | 89285 | 0.68 | 0.724245 |
Target: 5'- --aGCUGAaCCCCGGCGGCGAa---- -3' miRNA: 3'- ccaCGACUcGGGGCUGCUGCUgagaa -5' |
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6655 | 3' | -57.6 | NC_001847.1 | + | 88874 | 0.66 | 0.79985 |
Target: 5'- cGGUGCgcgcGGCggCGGCGGCGGCUCc- -3' miRNA: 3'- -CCACGac--UCGggGCUGCUGCUGAGaa -5' |
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6655 | 3' | -57.6 | NC_001847.1 | + | 88477 | 0.66 | 0.816555 |
Target: 5'- cGUGCUGcucGCCCUacucugccgaaugGACGACGGCggCUg -3' miRNA: 3'- cCACGACu--CGGGG-------------CUGCUGCUGa-GAa -5' |
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6655 | 3' | -57.6 | NC_001847.1 | + | 81439 | 0.69 | 0.674127 |
Target: 5'- --cGC-GAGCCgCCGGCGGCGcGCUCg- -3' miRNA: 3'- ccaCGaCUCGG-GGCUGCUGC-UGAGaa -5' |
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6655 | 3' | -57.6 | NC_001847.1 | + | 81031 | 0.69 | 0.643574 |
Target: 5'- cGGUGCUGcGCcuCCCGcGCGGCGAgcgcCUCUa -3' miRNA: 3'- -CCACGACuCG--GGGC-UGCUGCU----GAGAa -5' |
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6655 | 3' | -57.6 | NC_001847.1 | + | 80685 | 0.68 | 0.714343 |
Target: 5'- --gGCUGcGCgCCGGCGGCGGCUg-- -3' miRNA: 3'- ccaCGACuCGgGGCUGCUGCUGAgaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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