miRNA display CGI


Results 1 - 20 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6657 5' -64.2 NC_001847.1 + 16056 0.85 0.029719
Target:  5'- cGCGGCGGccGCGGCGCC--UCUGCUGGGc -3'
miRNA:   3'- -CGCCGCC--CGCCGCGGuaGGACGACCC- -5'
6657 5' -64.2 NC_001847.1 + 86519 0.75 0.147424
Target:  5'- cGCGGCGGcugGGCGCCcgCgUGCUGGcGg -3'
miRNA:   3'- -CGCCGCCcg-CCGCGGuaGgACGACC-C- -5'
6657 5' -64.2 NC_001847.1 + 52306 0.76 0.136995
Target:  5'- cGCGggcGCGGGCGGCGCCAaCCgggacaacacGCUGGu -3'
miRNA:   3'- -CGC---CGCCCGCCGCGGUaGGa---------CGACCc -5'
6657 5' -64.2 NC_001847.1 + 31148 0.76 0.133672
Target:  5'- uGCGGCuggccuucgcGGGCGGCGUCGacgCCgcGCUGGGc -3'
miRNA:   3'- -CGCCG----------CCCGCCGCGGUa--GGa-CGACCC- -5'
6657 5' -64.2 NC_001847.1 + 106620 0.76 0.130423
Target:  5'- cGCGGcCGGGCGGCGgCGgcgCgCUGCcGGGc -3'
miRNA:   3'- -CGCC-GCCCGCCGCgGUa--G-GACGaCCC- -5'
6657 5' -64.2 NC_001847.1 + 59321 0.76 0.127247
Target:  5'- cGCGGCGccGGCGGCGCCGUaCCagcccgGCaucgGGGg -3'
miRNA:   3'- -CGCCGC--CCGCCGCGGUA-GGa-----CGa---CCC- -5'
6657 5' -64.2 NC_001847.1 + 123804 0.76 0.12111
Target:  5'- gGCGGCGgcagcGGCaGGCGCCGUCCUggcGUUGGa -3'
miRNA:   3'- -CGCCGC-----CCG-CCGCGGUAGGA---CGACCc -5'
6657 5' -64.2 NC_001847.1 + 106760 0.77 0.115248
Target:  5'- cGCGGCGGGgggGGCGCCGUCUccgGCgcgaGGGc -3'
miRNA:   3'- -CGCCGCCCg--CCGCGGUAGGa--CGa---CCC- -5'
6657 5' -64.2 NC_001847.1 + 125329 0.77 0.109652
Target:  5'- gGCGGCGGGCcGgGCCggUCUGCcGGGa -3'
miRNA:   3'- -CGCCGCCCGcCgCGGuaGGACGaCCC- -5'
6657 5' -64.2 NC_001847.1 + 60304 0.77 0.106951
Target:  5'- gGCGGCGGGCGGCagcgcgcgcGCCA-CCUGCUc-- -3'
miRNA:   3'- -CGCCGCCCGCCG---------CGGUaGGACGAccc -5'
6657 5' -64.2 NC_001847.1 + 54522 0.77 0.103274
Target:  5'- gGCGGUgGGGCGGgGCCGUCCgggggcgcagacgGCgGGGg -3'
miRNA:   3'- -CGCCG-CCCGCCgCGGUAGGa------------CGaCCC- -5'
6657 5' -64.2 NC_001847.1 + 69460 0.78 0.099217
Target:  5'- cGCGcGCGcGGCGGCGgCGgggcUCCUGCUGGc -3'
miRNA:   3'- -CGC-CGC-CCGCCGCgGU----AGGACGACCc -5'
6657 5' -64.2 NC_001847.1 + 53859 0.79 0.083177
Target:  5'- gGCGGCGcuGGCGGCGCCGaCCgccGCgGGGg -3'
miRNA:   3'- -CGCCGC--CCGCCGCGGUaGGa--CGaCCC- -5'
6657 5' -64.2 NC_001847.1 + 17893 0.81 0.05973
Target:  5'- cGgGGCGGGCGGCGgCGUgCUGUUGGu -3'
miRNA:   3'- -CgCCGCCCGCCGCgGUAgGACGACCc -5'
6657 5' -64.2 NC_001847.1 + 113409 0.81 0.058219
Target:  5'- cGCGcGCGGGcCGGCGCCGgcccgcgcCCUGCUGGc -3'
miRNA:   3'- -CGC-CGCCC-GCCGCGGUa-------GGACGACCc -5'
6657 5' -64.2 NC_001847.1 + 33703 0.81 0.052534
Target:  5'- cGCGGCGcGGCGGCGCguggCCgaGCUGGGg -3'
miRNA:   3'- -CGCCGC-CCGCCGCGgua-GGa-CGACCC- -5'
6657 5' -64.2 NC_001847.1 + 96863 0.82 0.051199
Target:  5'- gGCGGUGGGCGGCG--GUCCgcGCUGGGg -3'
miRNA:   3'- -CGCCGCCCGCCGCggUAGGa-CGACCC- -5'
6657 5' -64.2 NC_001847.1 + 13123 0.82 0.051068
Target:  5'- gGCGcGCGGGCGGCGCCGcgccgCCUGCcgcggccggcgguUGGGc -3'
miRNA:   3'- -CGC-CGCCCGCCGCGGUa----GGACG-------------ACCC- -5'
6657 5' -64.2 NC_001847.1 + 41820 0.84 0.032132
Target:  5'- cGCgGGCGGGCGGCGCgGgUCCcaggGCUGGGg -3'
miRNA:   3'- -CG-CCGCCCGCCGCGgU-AGGa---CGACCC- -5'
6657 5' -64.2 NC_001847.1 + 102581 1.1 0.000417
Target:  5'- aGCGGCGGGCGGCGCCAUCCUGCUGGGc -3'
miRNA:   3'- -CGCCGCCCGCCGCGGUAGGACGACCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.