Results 1 - 20 of 379 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6657 | 5' | -64.2 | NC_001847.1 | + | 96631 | 0.66 | 0.550556 |
Target: 5'- cGCGG-GGGcCGGCGgguacgCGUCgUGCgcgGGGg -3' miRNA: 3'- -CGCCgCCC-GCCGCg-----GUAGgACGa--CCC- -5' |
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6657 | 5' | -64.2 | NC_001847.1 | + | 103587 | 0.66 | 0.503782 |
Target: 5'- cGCcGCcGGCGGCGCCggccucgucgucGUCCgacgagGCgGGGg -3' miRNA: 3'- -CGcCGcCCGCCGCGG------------UAGGa-----CGaCCC- -5' |
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6657 | 5' | -64.2 | NC_001847.1 | + | 121362 | 0.66 | 0.513008 |
Target: 5'- cGCGGCGGGCGGgGUgGgga-GC-GGGc -3' miRNA: 3'- -CGCCGCCCGCCgCGgUaggaCGaCCC- -5' |
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6657 | 5' | -64.2 | NC_001847.1 | + | 81450 | 0.66 | 0.513008 |
Target: 5'- gGCGGCGcgcucGCGcGCGCaCAUCUugcgGCUGGcGg -3' miRNA: 3'- -CGCCGCc----CGC-CGCG-GUAGGa---CGACC-C- -5' |
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6657 | 5' | -64.2 | NC_001847.1 | + | 103368 | 0.66 | 0.494629 |
Target: 5'- cGUGGC-GGCGGaCGCCAgcgccgcgucUCCgGCgccGGGu -3' miRNA: 3'- -CGCCGcCCGCC-GCGGU----------AGGaCGa--CCC- -5' |
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6657 | 5' | -64.2 | NC_001847.1 | + | 61834 | 0.66 | 0.503782 |
Target: 5'- gGCGGCcaGGGUGGUGUCGuacUCCagggGC-GGGu -3' miRNA: 3'- -CGCCG--CCCGCCGCGGU---AGGa---CGaCCC- -5' |
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6657 | 5' | -64.2 | NC_001847.1 | + | 82905 | 0.66 | 0.513008 |
Target: 5'- cGCGGCGcGCGGCGCCcgggggcuuuUUCUcGCUGu- -3' miRNA: 3'- -CGCCGCcCGCCGCGGu---------AGGA-CGACcc -5' |
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6657 | 5' | -64.2 | NC_001847.1 | + | 134388 | 0.66 | 0.503782 |
Target: 5'- gGCGGCGGGcCGGC-CUcgCCcuagGGGg -3' miRNA: 3'- -CGCCGCCC-GCCGcGGuaGGacgaCCC- -5' |
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6657 | 5' | -64.2 | NC_001847.1 | + | 77598 | 0.66 | 0.513008 |
Target: 5'- aCGGCGGcacccguuucugGCGGCGCC-----GCUGGGc -3' miRNA: 3'- cGCCGCC------------CGCCGCGGuaggaCGACCC- -5' |
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6657 | 5' | -64.2 | NC_001847.1 | + | 70195 | 0.66 | 0.513008 |
Target: 5'- cGCGGCacGGCGGaccagcugcUGCgCGUgCUGCUGGa -3' miRNA: 3'- -CGCCGc-CCGCC---------GCG-GUAgGACGACCc -5' |
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6657 | 5' | -64.2 | NC_001847.1 | + | 108740 | 0.66 | 0.494629 |
Target: 5'- gGCGGaUGGGCGGCggacgacggGCCcgCCcGCUGc- -3' miRNA: 3'- -CGCC-GCCCGCCG---------CGGuaGGaCGACcc -5' |
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6657 | 5' | -64.2 | NC_001847.1 | + | 83273 | 0.66 | 0.513008 |
Target: 5'- -nGGCGGGCgcagaGGCGCaCA-CCUGC-GGc -3' miRNA: 3'- cgCCGCCCG-----CCGCG-GUaGGACGaCCc -5' |
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6657 | 5' | -64.2 | NC_001847.1 | + | 70638 | 0.66 | 0.513008 |
Target: 5'- gGCGcugcGCGGGCuggaugacguGGcCGCgCAU-CUGCUGGGg -3' miRNA: 3'- -CGC----CGCCCG----------CC-GCG-GUAgGACGACCC- -5' |
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6657 | 5' | -64.2 | NC_001847.1 | + | 75344 | 0.66 | 0.513008 |
Target: 5'- -gGGCGGGCGGCagugguaaaaGCgCGUCUcgGC-GGGc -3' miRNA: 3'- cgCCGCCCGCCG----------CG-GUAGGa-CGaCCC- -5' |
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6657 | 5' | -64.2 | NC_001847.1 | + | 14809 | 0.66 | 0.503782 |
Target: 5'- aGCGGCGGagcugcGCGGCGC---CCUGCgcgcgGuGGa -3' miRNA: 3'- -CGCCGCC------CGCCGCGguaGGACGa----C-CC- -5' |
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6657 | 5' | -64.2 | NC_001847.1 | + | 70523 | 0.66 | 0.494629 |
Target: 5'- aGCGGCugcuGGGCGGCGUg--CUggcGCUGGc -3' miRNA: 3'- -CGCCG----CCCGCCGCGguaGGa--CGACCc -5' |
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6657 | 5' | -64.2 | NC_001847.1 | + | 85146 | 0.66 | 0.513008 |
Target: 5'- gGCGGUGGGC-GCGCgGgcUCCUcucGCggaGGGc -3' miRNA: 3'- -CGCCGCCCGcCGCGgU--AGGA---CGa--CCC- -5' |
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6657 | 5' | -64.2 | NC_001847.1 | + | 49737 | 0.66 | 0.503782 |
Target: 5'- cCGGCGaGGCGGUGCgCGUgCcGCUGu- -3' miRNA: 3'- cGCCGC-CCGCCGCG-GUAgGaCGACcc -5' |
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6657 | 5' | -64.2 | NC_001847.1 | + | 34377 | 0.66 | 0.516718 |
Target: 5'- uGCGGCcgaaacaacGGCGGcCGCCG-CCgcggcagacgcggcGCUGGGg -3' miRNA: 3'- -CGCCGc--------CCGCC-GCGGUaGGa-------------CGACCC- -5' |
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6657 | 5' | -64.2 | NC_001847.1 | + | 32267 | 0.66 | 0.513008 |
Target: 5'- cGCGuGCGuGGCucGCGCCGUCC-GCgUGGc -3' miRNA: 3'- -CGC-CGC-CCGc-CGCGGUAGGaCG-ACCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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