miRNA display CGI


Results 1 - 20 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6657 5' -64.2 NC_001847.1 + 96631 0.66 0.550556
Target:  5'- cGCGG-GGGcCGGCGgguacgCGUCgUGCgcgGGGg -3'
miRNA:   3'- -CGCCgCCC-GCCGCg-----GUAGgACGa--CCC- -5'
6657 5' -64.2 NC_001847.1 + 70523 0.66 0.494629
Target:  5'- aGCGGCugcuGGGCGGCGUg--CUggcGCUGGc -3'
miRNA:   3'- -CGCCG----CCCGCCGCGguaGGa--CGACCc -5'
6657 5' -64.2 NC_001847.1 + 134388 0.66 0.503782
Target:  5'- gGCGGCGGGcCGGC-CUcgCCcuagGGGg -3'
miRNA:   3'- -CGCCGCCC-GCCGcGGuaGGacgaCCC- -5'
6657 5' -64.2 NC_001847.1 + 82905 0.66 0.513008
Target:  5'- cGCGGCGcGCGGCGCCcgggggcuuuUUCUcGCUGu- -3'
miRNA:   3'- -CGCCGCcCGCCGCGGu---------AGGA-CGACcc -5'
6657 5' -64.2 NC_001847.1 + 100506 0.66 0.503782
Target:  5'- aCGGCGGuGCGGUGUgGUgggCUGC-GGGu -3'
miRNA:   3'- cGCCGCC-CGCCGCGgUAg--GACGaCCC- -5'
6657 5' -64.2 NC_001847.1 + 32267 0.66 0.513008
Target:  5'- cGCGuGCGuGGCucGCGCCGUCC-GCgUGGc -3'
miRNA:   3'- -CGC-CGC-CCGc-CGCGGUAGGaCG-ACCc -5'
6657 5' -64.2 NC_001847.1 + 49737 0.66 0.503782
Target:  5'- cCGGCGaGGCGGUGCgCGUgCcGCUGu- -3'
miRNA:   3'- cGCCGC-CCGCCGCG-GUAgGaCGACcc -5'
6657 5' -64.2 NC_001847.1 + 34377 0.66 0.516718
Target:  5'- uGCGGCcgaaacaacGGCGGcCGCCG-CCgcggcagacgcggcGCUGGGg -3'
miRNA:   3'- -CGCCGc--------CCGCC-GCGGUaGGa-------------CGACCC- -5'
6657 5' -64.2 NC_001847.1 + 70195 0.66 0.513008
Target:  5'- cGCGGCacGGCGGaccagcugcUGCgCGUgCUGCUGGa -3'
miRNA:   3'- -CGCCGc-CCGCC---------GCG-GUAgGACGACCc -5'
6657 5' -64.2 NC_001847.1 + 75344 0.66 0.513008
Target:  5'- -gGGCGGGCGGCagugguaaaaGCgCGUCUcgGC-GGGc -3'
miRNA:   3'- cgCCGCCCGCCG----------CG-GUAGGa-CGaCCC- -5'
6657 5' -64.2 NC_001847.1 + 81450 0.66 0.513008
Target:  5'- gGCGGCGcgcucGCGcGCGCaCAUCUugcgGCUGGcGg -3'
miRNA:   3'- -CGCCGCc----CGC-CGCG-GUAGGa---CGACC-C- -5'
6657 5' -64.2 NC_001847.1 + 83273 0.66 0.513008
Target:  5'- -nGGCGGGCgcagaGGCGCaCA-CCUGC-GGc -3'
miRNA:   3'- cgCCGCCCG-----CCGCG-GUaGGACGaCCc -5'
6657 5' -64.2 NC_001847.1 + 77598 0.66 0.513008
Target:  5'- aCGGCGGcacccguuucugGCGGCGCC-----GCUGGGc -3'
miRNA:   3'- cGCCGCC------------CGCCGCGGuaggaCGACCC- -5'
6657 5' -64.2 NC_001847.1 + 103368 0.66 0.494629
Target:  5'- cGUGGC-GGCGGaCGCCAgcgccgcgucUCCgGCgccGGGu -3'
miRNA:   3'- -CGCCGcCCGCC-GCGGU----------AGGaCGa--CCC- -5'
6657 5' -64.2 NC_001847.1 + 70638 0.66 0.513008
Target:  5'- gGCGcugcGCGGGCuggaugacguGGcCGCgCAU-CUGCUGGGg -3'
miRNA:   3'- -CGC----CGCCCG----------CC-GCG-GUAgGACGACCC- -5'
6657 5' -64.2 NC_001847.1 + 108740 0.66 0.494629
Target:  5'- gGCGGaUGGGCGGCggacgacggGCCcgCCcGCUGc- -3'
miRNA:   3'- -CGCC-GCCCGCCG---------CGGuaGGaCGACcc -5'
6657 5' -64.2 NC_001847.1 + 61834 0.66 0.503782
Target:  5'- gGCGGCcaGGGUGGUGUCGuacUCCagggGC-GGGu -3'
miRNA:   3'- -CGCCG--CCCGCCGCGGU---AGGa---CGaCCC- -5'
6657 5' -64.2 NC_001847.1 + 121362 0.66 0.513008
Target:  5'- cGCGGCGGGCGGgGUgGgga-GC-GGGc -3'
miRNA:   3'- -CGCCGCCCGCCgCGgUaggaCGaCCC- -5'
6657 5' -64.2 NC_001847.1 + 103587 0.66 0.503782
Target:  5'- cGCcGCcGGCGGCGCCggccucgucgucGUCCgacgagGCgGGGg -3'
miRNA:   3'- -CGcCGcCCGCCGCGG------------UAGGa-----CGaCCC- -5'
6657 5' -64.2 NC_001847.1 + 14809 0.66 0.503782
Target:  5'- aGCGGCGGagcugcGCGGCGC---CCUGCgcgcgGuGGa -3'
miRNA:   3'- -CGCCGCC------CGCCGCGguaGGACGa----C-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.