miRNA display CGI


Results 1 - 20 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6657 5' -64.2 NC_001847.1 + 63 0.71 0.290549
Target:  5'- uGCGGCGGGCGGgGgCGg---GgUGGGg -3'
miRNA:   3'- -CGCCGCCCGCCgCgGUaggaCgACCC- -5'
6657 5' -64.2 NC_001847.1 + 73 0.68 0.416075
Target:  5'- cGCGGCGGGCccGG-GCCcgCU--CUGGGc -3'
miRNA:   3'- -CGCCGCCCG--CCgCGGuaGGacGACCC- -5'
6657 5' -64.2 NC_001847.1 + 492 0.68 0.416075
Target:  5'- gGCGGCgGGGCGGCcgcgcGCCAaccccccugUCCgcGgaGGGc -3'
miRNA:   3'- -CGCCG-CCCGCCG-----CGGU---------AGGa-CgaCCC- -5'
6657 5' -64.2 NC_001847.1 + 555 0.66 0.494629
Target:  5'- cGUGGC-GGCGGaCGCCAgcgccgcgucUCCgGCgccGGGu -3'
miRNA:   3'- -CGCCGcCCGCC-GCGGU----------AGGaCGa--CCC- -5'
6657 5' -64.2 NC_001847.1 + 774 0.66 0.503782
Target:  5'- cGCcGCcGGCGGCGCCggccucgucgucGUCCgacgagGCgGGGg -3'
miRNA:   3'- -CGcCGcCCGCCGCGG------------UAGGa-----CGaCCC- -5'
6657 5' -64.2 NC_001847.1 + 1101 0.71 0.277898
Target:  5'- cGCGGCcgcGGGCGGCGCCG-CC-GC-GGc -3'
miRNA:   3'- -CGCCG---CCCGCCGCGGUaGGaCGaCCc -5'
6657 5' -64.2 NC_001847.1 + 1280 0.69 0.36814
Target:  5'- aGCGGuuGGCGGCGCgGUg--GCUGGc -3'
miRNA:   3'- -CGCCgcCCGCCGCGgUAggaCGACCc -5'
6657 5' -64.2 NC_001847.1 + 1933 0.72 0.237074
Target:  5'- cGCGGCGGccacucgggccGcCGGCGCuCGUCCUcGCcGGGc -3'
miRNA:   3'- -CGCCGCC-----------C-GCCGCG-GUAGGA-CGaCCC- -5'
6657 5' -64.2 NC_001847.1 + 2107 0.66 0.540137
Target:  5'- gGCGGCGGGCcGCgaucucgGCCAgcgCCU-CgGGGu -3'
miRNA:   3'- -CGCCGCCCGcCG-------CGGUa--GGAcGaCCC- -5'
6657 5' -64.2 NC_001847.1 + 2212 0.68 0.416075
Target:  5'- gGCGGCaGuaGGcCGCCAgcgCCgcggcGCUGGGc -3'
miRNA:   3'- -CGCCGcCcgCC-GCGGUa--GGa----CGACCC- -5'
6657 5' -64.2 NC_001847.1 + 2275 0.69 0.386854
Target:  5'- cGCGGCGGaagccgccgucggcgGCGGgGCCG-CCgggcgGCaUGGGc -3'
miRNA:   3'- -CGCCGCC---------------CGCCgCGGUaGGa----CG-ACCC- -5'
6657 5' -64.2 NC_001847.1 + 2557 0.67 0.440572
Target:  5'- cCGGCGGGCugucuucGGCGCgGgcgCCUGCgcGGc -3'
miRNA:   3'- cGCCGCCCG-------CCGCGgUa--GGACGa-CCc -5'
6657 5' -64.2 NC_001847.1 + 2755 0.71 0.271739
Target:  5'- cCGGCGcGGCGGCGCCGgcgCCgGCg--- -3'
miRNA:   3'- cGCCGC-CCGCCGCGGUa--GGaCGaccc -5'
6657 5' -64.2 NC_001847.1 + 2957 0.67 0.458814
Target:  5'- cGCGGCGGccgccuCGGCGCgCAgcgCC-GCcGGGg -3'
miRNA:   3'- -CGCCGCCc-----GCCGCG-GUa--GGaCGaCCC- -5'
6657 5' -64.2 NC_001847.1 + 3313 0.68 0.407003
Target:  5'- cGCGGCGcGGgcgccgcugccgcCGGCGCCGgccUCCggguagGCcaUGGGg -3'
miRNA:   3'- -CGCCGC-CC-------------GCCGCGGU---AGGa-----CG--ACCC- -5'
6657 5' -64.2 NC_001847.1 + 3495 0.68 0.399674
Target:  5'- cCGGCGGcaGCGGCGCCGUCaC-GCUcccGGu -3'
miRNA:   3'- cGCCGCC--CGCCGCGGUAG-GaCGA---CCc -5'
6657 5' -64.2 NC_001847.1 + 3553 0.67 0.462334
Target:  5'- cGCGGC-GGCGGCguaguugaggguguaGCCG-CCgggGCUGaGGa -3'
miRNA:   3'- -CGCCGcCCGCCG---------------CGGUaGGa--CGAC-CC- -5'
6657 5' -64.2 NC_001847.1 + 3807 0.76 0.130423
Target:  5'- cGCGGcCGGGCGGCGgCGgcgCgCUGCcGGGc -3'
miRNA:   3'- -CGCC-GCCCGCCGCgGUa--G-GACGaCCC- -5'
6657 5' -64.2 NC_001847.1 + 3878 0.68 0.399674
Target:  5'- gGCGGCGGcccgucgcGCGGCGCCGcggcguagCCaGCgcGGGc -3'
miRNA:   3'- -CGCCGCC--------CGCCGCGGUa-------GGaCGa-CCC- -5'
6657 5' -64.2 NC_001847.1 + 3947 0.76 0.130423
Target:  5'- cGCGGCGGGgggGGCGCCGUCUccgGCggcgaGGGc -3'
miRNA:   3'- -CGCCGCCCg--CCGCGGUAGGa--CGa----CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.